Z. japonica Nagirizaki
Zjn_sc00026.1.g02750.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G43790.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
13 |
250 |
4e-77 |
161.9 |
45.2 |
60.5 |
| Subject |
484 |
57 |
296 |
|
| Annot |
| Symbols: ZIFL2 | zinc induced facilitator-like 2 | chr3:15655443-15658848 FORWARD LENGTH=484 |
| NR |
ref|XP_006645747.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
13 |
250 |
e-112 |
170.6 |
63.5 |
72.2 |
| Subject |
510 |
89 |
325 |
|
| Annot |
PREDICTED: probable peptide/nitrate transporter At3g43790-like [Oryza brachyantha] |
| IRGSP |
Os01t0268100-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
13 |
250 |
e-108 |
162.5 |
62.9 |
72.2 |
| Subject |
486 |
60 |
296 |
|
| Annot |
|
| Sbicolor |
Sobic.003G125800.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
299 |
13 |
273 |
e-110 |
164.2 |
63.5 |
74.6 |
| Subject |
491 |
69 |
333 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00026.1.g02750.1.sm.mkhc |
length: 299 aa. |
| IPR011701 |
Major facilitator superfamily |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF07690 |
MFS_1 |
1.2e-23 |
11-273 |
| IPR016196 |
Major facilitator superfamily domain, general substrate transporter |
| superfamily |
SSF103473 |
MFS |
2.8e-30 |
11-287 |
| IPR020846 |
Major facilitator superfamily domain |
| ProfileScan |
PS50850 |
MFS |
17.460 |
1-299 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1250.20 |
no description |
6.7e-29 |
12-196 |
| HMMPanther |
PTHR24003 |
MAJOR |
7.7e-58 |
13-282 |
| HMMPanther |
PTHR24003:SF69 |
SUBFAMILY |
7.7e-58 |
13-282 |
| Seg |
seg |
seg |
NA |
268-284 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 1235905 | 1244252 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00026.1 |
maker |
exon |
1235905 |
1235924 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:1 |
| Zjn_sc00026.1 |
maker |
exon |
1236712 |
1236742 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:2 |
| Zjn_sc00026.1 |
maker |
exon |
1237714 |
1237774 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:3 |
| Zjn_sc00026.1 |
maker |
exon |
1237904 |
1238006 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:4 |
| Zjn_sc00026.1 |
maker |
exon |
1238118 |
1238220 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:5 |
| Zjn_sc00026.1 |
maker |
exon |
1238834 |
1238887 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:6 |
| Zjn_sc00026.1 |
maker |
exon |
1238973 |
1239035 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:7 |
| Zjn_sc00026.1 |
maker |
exon |
1239836 |
1239885 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:8 |
| Zjn_sc00026.1 |
maker |
exon |
1239972 |
1240047 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:9 |
| Zjn_sc00026.1 |
maker |
exon |
1240621 |
1240809 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:10 |
| Zjn_sc00026.1 |
maker |
exon |
1242533 |
1242621 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:11 |
| Zjn_sc00026.1 |
maker |
exon |
1242882 |
1242925 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:12 |
| Zjn_sc00026.1 |
maker |
exon |
1244236 |
1244252 |
. |
+ |
. |
ID=Zjn_sc00026.1.g02750.1.sm.mkhc:exon:13 |