Z. japonica Nagirizaki
Zjn_sc00026.1.g01720.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 190 20 173 1e-43 132.6 48.9 64.2
Subject 252 73 237
Annot | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252
NR ref|XP_006643880.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 190 25 187 9e-68 136.3 68.9 78.9
Subject 259 84 255
Annot PREDICTED: MADS-box transcription factor 3-like [Oryza brachyantha]
IRGSP Os05t0203800-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 190 20 147 9e-42 122.6 47.4 58.4
Subject 233 99 233
Annot
Sbicolor Sobic.003G027000.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 190 25 185 1e-67 141.6 67.4 76.8
Subject 269 103 269
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00026.1.g01720.1.sm.mkhc length: 190 aa.
IPR002487 Transcription factor, K-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 7.7e-22 40-127
ProfileScan PS51297 K_BOX 10.202 39-131
no_ID  
Coil coil coiled-coil NA 50-71
78-99
HMMPanther PTHR11945 MADS 1.7e-21 25-178
HMMPanther PTHR11945:SF19 MADS 1.7e-21 25-178
Pseudomolecule
Chromosome Start End Strand
6776370779853+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00026.1 maker exon 776370 776440 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:1
Zjn_sc00026.1 maker exon 776873 776954 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:2
Zjn_sc00026.1 maker exon 778074 778135 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:3
Zjn_sc00026.1 maker exon 778291 778363 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:4
Zjn_sc00026.1 maker exon 778693 778734 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:5
Zjn_sc00026.1 maker exon 778816 778857 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:6
Zjn_sc00026.1 maker exon 778956 779137 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:7
Zjn_sc00026.1 maker exon 779272 779332 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:8
Zjn_sc00026.1 maker exon 779537 779853 . + . ID=Zjn_sc00026.1.g01720.1.sm.mkhc:exon:9

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