Z. japonica Nagirizaki
Zjn_sc00026.1.g01710.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G58780.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 25 95 1e-30 253.7 63.2 69.5
Subject 241 6 76
Annot | Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=241
NR ref|XP_008654205.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 94 1e-35 271.6 80 88.4
Subject 258 1 92
Annot PREDICTED: AGAMOUS-like protein isoform X1 [Zea mays] gi|670427055|ref|XP_008654207.1| PREDICTED: AGAMOUS-like protein isoform X2 [Zea mays]
IRGSP Os01t0201700-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 94 4e-35 167.4 76.8 89.5
Subject 159 6 105
Annot
Sbicolor Sobic.003G027000.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 94 7e-37 283.1 76.8 83.2
Subject 269 14 101
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00026.1.g01710.1.sm.mk length: 95 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 5.4e-34 37-57
57-72
72-93
HMMPfam PF00319 SRF-TF 4.7e-30 43-93
HMMSmart SM00432 no description 2.4e-41 35-94
PatternScan PS00350 MADS_BOX_1 NA 37-91
ProfileScan PS50066 MADS_BOX_2 33.473 35-95
superfamily SSF55455 SRF-like 1.8e-28 36-95
no_ID  
HMMPanther PTHR11945 MADS 1.9e-47 24-93
HMMPanther PTHR11945:SF19 MADS 1.9e-47 24-93
Pseudomolecule
Chromosome Start End Strand
6772974773490+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00026.1 maker_non_over exon 772974 772988 . + . ID=Zjn_sc00026.1.g01710.1.sm.mk:exon:1
Zjn_sc00026.1 maker_non_over exon 773218 773490 . + . ID=Zjn_sc00026.1.g01710.1.sm.mk:exon:2

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