Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00026.1.g01600.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00026.1)

BLAST

TAIR10	AT4G18910.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	209	44	198	3e-54	140.7	48.8	59.3
		Subject	294	46	205
		Annot	\| Symbols: NIP1;2, NLM2, ATNLM2 \| NOD26-like intrinsic protein 1;2 \| chr4:10366211-10368179 FORWARD LENGTH=294
NR	ref\|XP_002454982.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	209	13	198	8e-83	129.7	75.6	80.9
		Subject	271	1	184
		Annot	hypothetical protein SORBIDRAFT_03g002490 [Sorghum bicolor] gi\|241926957\|gb\|EES00102.1\| hypothetical protein SORBIDRAFT_03g002490 [Sorghum bicolor]
IRGSP	Os02t0232900-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	209	12	198	1e-63	135.9	56.9	67.9
		Subject	284	21	194
		Annot
Sbicolor	Sobic.003G026400.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	209	13	198	1e-85	134.9	75.6	80.9
		Subject	282	12	195
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000425	Major intrinsic protein
Zjn_sc00026.1.g01600.1.sm.mkhc				length: 209 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
FPrintScan	PR00783	MINTRINSICP	2.9e-26	50-69 89-113 126-145 173-191
HMMPanther	PTHR19139	AQUAPORIN	9.1e-88	12-194
HMMPfam	PF00230	MIP	1.4e-36	43-196
IPR022357	Major intrinsic protein, conserved site
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
PatternScan	PS00221	MIP	NA	107-115
IPR023271	Aquaporin-like
Gene3D	G3DSA:1.20.1080.10	no description	1.5e-41	42-194
superfamily	SSF81338	Aquaporin-like	1.1e-36	39-195
no_ID
HMMPanther	PTHR19139:SF22	NODULIN-26-RELATED	9.1e-88	12-194
Seg	seg	seg	NA	7-22 129-142

Pseudomolecule

Chromosome	Start	End	Strand
6	719271	720522	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00026.1	maker	exon	719271	719685	.	+	.	ID=Zjn_sc00026.1.g01600.1.sm.mkhc:exon:1
Zjn_sc00026.1	maker	exon	719831	720259	.	+	.	ID=Zjn_sc00026.1.g01600.1.sm.mkhc:exon:2
Zjn_sc00026.1	maker	exon	720475	720522	.	+	.	ID=Zjn_sc00026.1.g01600.1.sm.mkhc:exon:3