Z. japonica Nagirizaki
Zjn_sc00026.1.g00570.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G52280.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 415 1 126 2e-53 49.6 26.5 28.9
Subject 206 1 184
Annot | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D | chr1:19468150-19469449 REVERSE LENGTH=206
NR dbj|BAJ97903.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 415 127 384 4e-90 127.5 44.6 49.9
Subject 529 19 275
Annot predicted protein [Hordeum vulgare subsp. vulgare]
IRGSP Os01t0227500-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 415 176 384 2e-75 135.2 38.8 42.4
Subject 561 69 278
Annot
Sbicolor Sobic.003G010100.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 415 141 384 3e-83 125.8 40.2 46.3
Subject 522 23 263
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00026.1.g00570.1.sm.mkhc length: 415 aa.
IPR001128 Cytochrome P450
method AccNumber shortName E-value location
Molecular Function GO:0005506 iron ion binding    
Molecular Function GO:0009055 electron carrier activity    
Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    
Molecular Function GO:0020037 heme binding    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:1.10.630.10 no description 1e-43 151-389
HMMPfam PF00067 p450 3.1e-22 156-383
superfamily SSF48264 Cytochrome 1.1e-43 153-384
IPR001806 Small GTPase superfamily
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMPfam PF00071 Ras 1.2e-11 58-118
IPR002401 Cytochrome P450, E-class, group I
Molecular Function GO:0005506 iron ion binding    
Molecular Function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    
Molecular Function GO:0020037 heme binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00463 EP450I 2.1e-05 183-202
207-228
301-319
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 0.0041 11-121
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.2e-20 9-121
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 1.8e-06 6-121
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-21 4-154
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.3e-14 4-51
57-125
HMMPanther PTHR24073 FAMILY 2.9e-52 1-127
HMMPanther PTHR24073:SF57 SUBFAMILY 2.9e-52 1-127
ProfileScan PS51419 RAB 11.176 1-167
Seg seg seg NA 154-182
200-208
264-285
Pseudomolecule
Chromosome Start End Strand
6261788265458-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00026.1 maker exon 261788 262655 . - . ID=Zjn_sc00026.1.g00570.1.sm.mkhc:exon:5
Zjn_sc00026.1 maker exon 263583 263728 . - . ID=Zjn_sc00026.1.g00570.1.sm.mkhc:exon:4
Zjn_sc00026.1 maker exon 263814 263894 . - . ID=Zjn_sc00026.1.g00570.1.sm.mkhc:exon:3
Zjn_sc00026.1 maker exon 264966 265065 . - . ID=Zjn_sc00026.1.g00570.1.sm.mkhc:exon:2
Zjn_sc00026.1 maker exon 265317 265458 . - . ID=Zjn_sc00026.1.g00570.1.sm.mkhc:exon:1

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