Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00026.1.g00400.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00026.1)

BLAST

TAIR10	AT2G22670.4		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	247	17	246	3e-56	136.8	54.7	66
		Subject	338	65	335
		Annot	\| Symbols: IAA8 \| indoleacetic acid-induced protein 8 \| chr2:9636877-9638459 FORWARD LENGTH=338
NR	ref\|NP_001130483.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	247	1	247	1e-95	98.8	76.9	83.4
		Subject	244	1	244
		Annot	IAA17-auxin-responsive Aux/IAA family member [Zea mays] gi\|194689256\|gb\|ACF78712.1\| unknown [Zea mays] gi\|194702428\|gb\|ACF85298.1\| unknown [Zea mays] gi\|194703038\|gb\|ACF85603.1\| unknown [Zea mays] gi\|195635865\|gb\|ACG37401.1\| IAA17 - auxin-responsive Aux/IAA family member [Zea mays] gi\|413944830\|gb\|AFW77479.1\| IAA17-auxin-responsive Aux/IAA family member [Zea mays]
IRGSP	Os05t0230700-02_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	247	1	247	1e-81	104	71.3	78.5
		Subject	257	1	257
		Annot
Sbicolor	Sobic.010G146400.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	247	1	242	9e-74	100.8	61.9	71.7
		Subject	249	1	246
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003311	AUX/IAA protein
Zjn_sc00026.1.g00400.1.am.mkhc				length: 247 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	1e-70	17-238
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	32.716	132-229
no_ID
HMMPanther	PTHR31734	FAMILY	2.1e-100	17-246
Seg	seg	seg	NA	33-50 82-97
superfamily	SSF54277	CAD	1.2e-21	119-227

Pseudomolecule

Chromosome	Start	End	Strand
6	192910	194907	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00026.1	maker	exon	192910	193311	.	-	.	ID=Zjn_sc00026.1.g00400.1.am.mkhc:exon:5
Zjn_sc00026.1	maker	exon	193465	193526	.	-	.	ID=Zjn_sc00026.1.g00400.1.am.mkhc:exon:4
Zjn_sc00026.1	maker	exon	193666	193792	.	-	.	ID=Zjn_sc00026.1.g00400.1.am.mkhc:exon:3
Zjn_sc00026.1	maker	exon	194144	194379	.	-	.	ID=Zjn_sc00026.1.g00400.1.am.mkhc:exon:2
Zjn_sc00026.1	maker	exon	194575	194907	.	-	.	ID=Zjn_sc00026.1.g00400.1.am.mkhc:exon:1