Z. japonica Nagirizaki
Zjn_sc00025.1.g04430.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G37060.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 177 1 138 1e-52 97.7 58.8 65.5
Subject 173 1 138
Annot | Symbols: NF-YB8 | nuclear factor Y, subunit B8 | chr2:15576336-15577660 FORWARD LENGTH=173
NR gb|AFW82269.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 177 1 177 5e-76 100.6 89.8 94.4
Subject 178 1 178
Annot hypothetical protein ZEAMMB73_204841 [Zea mays]
IRGSP Os05t0463800-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 177 30 121 3e-49 72.9 49.7 52
Subject 129 36 127
Annot
Sbicolor Sobic.009G166200.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 177 1 177 1e-76 101.7 89.8 93.2
Subject 180 1 180
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00025.1.g04430.1.sm.mkhc length: 177 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 67-83
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 8.7e-23 64-82
83-101
102-120
HMMPanther PTHR11064:SF9 CCAAT-BINDING 3e-71 30-121
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 4e-27 36-100
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 9.8e-52 28-131
superfamily SSF47113 Histone-fold 1.7e-34 33-121
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 3e-71 30-121
Seg seg seg NA 7-29
Pseudomolecule
Chromosome Start End Strand
1880251858028495-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00025.1 maker exon 2664841 2665345 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:6
Zjn_sc00025.1 maker exon 2665433 2665501 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:5
Zjn_sc00025.1 maker exon 2666078 2666128 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:4
Zjn_sc00025.1 maker exon 2666207 2666299 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:3
Zjn_sc00025.1 maker exon 2667642 2667771 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:2
Zjn_sc00025.1 maker exon 2667882 2668151 . - . ID=Zjn_sc00025.1.g04430.1.sm.mkhc:exon:1

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