Z. japonica Nagirizaki
Zjn_sc00025.1.g03490.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G38120.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 820 193 663 0.0 59.1 41.7 45
Subject 485 2 420
Annot | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485
NR gb|EAY98240.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 820 176 820 0.0 73.9 56 59.6
Subject 606 5 606
Annot hypothetical protein OsI_20150 [Oryza sativa Indica Group]
IRGSP Os05t0447200-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 820 176 660 0.0 61.3 45.4 48.2
Subject 503 5 438
Annot
Sbicolor Sobic.009G156600.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 820 173 680 0.0 60.6 46.7 49.6
Subject 497 1 449
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00025.1.g03490.1.am.mk length: 820 aa.
IPR013057 Amino acid transporter, transmembrane
method AccNumber shortName E-value location
HMMPfam PF01490 Aa_trans 2e-66 247-654
no_ID  
HMMPanther PTHR22950 AMINO 0 144-806
HMMPanther PTHR22950:SF13 PREDICTED: 0 144-806
Seg seg seg NA 10-27
49-64
160-176
660-676
698-715
766-787
809-818
Pseudomolecule
Chromosome Start End Strand
1875772797586616-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00025.1 maker_non_over exon 2216935 2217282 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:11
Zjn_sc00025.1 maker_non_over exon 2217397 2218027 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:10
Zjn_sc00025.1 maker_non_over exon 2219832 2219929 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:9
Zjn_sc00025.1 maker_non_over exon 2220022 2220208 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:8
Zjn_sc00025.1 maker_non_over exon 2220315 2220427 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:7
Zjn_sc00025.1 maker_non_over exon 2220711 2221064 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:6
Zjn_sc00025.1 maker_non_over exon 2221163 2221421 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:5
Zjn_sc00025.1 maker_non_over exon 2222019 2222086 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:4
Zjn_sc00025.1 maker_non_over exon 2222542 2222627 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:3
Zjn_sc00025.1 maker_non_over exon 2225139 2225253 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:2
Zjn_sc00025.1 maker_non_over exon 2226069 2226272 . - . ID=Zjn_sc00025.1.g03490.1.am.mk:exon:1

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