Z. japonica Nagirizaki
Zjn_sc00025.1.g02860.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G22250.3 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
353 |
e-154 |
133.8 |
71.5 |
84.8 |
| Subject |
475 |
122 |
474 |
|
| Annot |
| Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase | chr2:9458011-9460297 REVERSE LENGTH=475 |
| NR |
ref|XP_002441156.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
353 |
0.0 |
130.1 |
93.2 |
98.3 |
| Subject |
462 |
109 |
461 |
|
| Annot |
hypothetical protein SORBIDRAFT_09g021360 [Sorghum bicolor] gi|241946441|gb|EES19586.1| hypothetical protein SORBIDRAFT_09g021360 [Sorghum bicolor] |
| IRGSP |
Os01t0871300-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
355 |
0.0 |
129 |
90.7 |
97.5 |
| Subject |
458 |
104 |
458 |
|
| Annot |
|
| Sbicolor |
Sobic.009G149400.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
353 |
0.0 |
130.1 |
93.2 |
98.3 |
| Subject |
462 |
109 |
461 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00025.1.g02860.1.sm.mkhc |
length: 355 aa. |
| IPR004838 |
Aminotransferases, class-I, pyridoxal-phosphate-binding site |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| PatternScan |
PS00105 |
AA_TRANSFER_CLASS_1 |
NA |
182-195 |
| IPR004839 |
Aminotransferase, class I/classII |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00155 |
Aminotran_1_2 |
1.1e-68 |
8-333 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
3e-76 |
3-220 |
| IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.90.1150.10 |
no description |
1.7e-35 |
221-346 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
1.5e-108 |
2-346 |
| no_ID |
|
| HMMPanther |
PTHR11751 |
SUBGROUP |
5.6e-177 |
1-349 |
| HMMPanther |
PTHR11751:SF35 |
ASPARTATE |
5.6e-177 |
1-349 |
| Seg |
seg |
seg |
NA |
225-237 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 18 | 7156843 | 7160185 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00025.1 |
maker |
exon |
1796499 |
1796847 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:9 |
| Zjn_sc00025.1 |
maker |
exon |
1796926 |
1797039 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:8 |
| Zjn_sc00025.1 |
maker |
exon |
1797116 |
1797286 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:7 |
| Zjn_sc00025.1 |
maker |
exon |
1797830 |
1797913 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:6 |
| Zjn_sc00025.1 |
maker |
exon |
1798070 |
1798183 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:5 |
| Zjn_sc00025.1 |
maker |
exon |
1798292 |
1798540 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:4 |
| Zjn_sc00025.1 |
maker |
exon |
1799236 |
1799339 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:3 |
| Zjn_sc00025.1 |
maker |
exon |
1799426 |
1799519 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:2 |
| Zjn_sc00025.1 |
maker |
exon |
1799799 |
1799841 |
. |
- |
. |
ID=Zjn_sc00025.1.g02860.1.sm.mkhc:exon:1 |