Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00025.1.g02700.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00025.1)

BLAST

TAIR10	AT4G38620.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	426	183	411	2e-75	66.2	34.5	39.7
		Subject	282	1	239
		Annot	\| Symbols: ATMYB4, MYB4 \| myb domain protein 4 \| chr4:18053866-18054876 FORWARD LENGTH=282
NR	ref\|NP_001174439.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	426	183	424	4e-94	61	43	46.9
		Subject	260	1	255
		Annot	Os05g0429900 [Oryza sativa Japonica Group] gi\|55733916\|gb\|AAV59423.1\| putative myb protein [Oryza sativa Japonica Group] gi\|125552436\|gb\|EAY98145.1\| hypothetical protein OsI_20061 [Oryza sativa Indica Group] gi\|194396093\|gb\|ACF60464.1\| myb transcription factor [Oryza sativa Japonica Group] gi\|215678961\|dbj\|BAG96391.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|215694956\|dbj\|BAG90147.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|215704494\|dbj\|BAG93928.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|255676392\|dbj\|BAH93167.1\| Os05g0429900 [Oryza sativa Japonica Group]
IRGSP	Os05t0429900-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	426	183	424	3e-97	61	43	46.9
		Subject	260	1	255
		Annot
Sbicolor	Sobic.003G373000.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	426	183	424	4e-91	63.1	41.3	46.7
		Subject	269	1	264
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001005	SANT/Myb domain
Zjn_sc00025.1.g02700.1.am.mk				length: 426 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003682	chromatin binding
HMMPfam	PF00249	Myb_DNA-binding	2.1e-14	196-243 249-293
HMMSmart	SM00717	SANT	4.1e-16	195-245 248-296
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	3e-26	187-246 247-298
superfamily	SSF46689	Homeodomain-like	1.5e-26	196-295
IPR017930	Myb domain
ProfileScan	PS51294	HTH_MYB	17.186	244-298 191-243
no_ID
HMMPanther	PTHR10641	MYB-LIKE	3.7e-102	179-317
HMMPanther	PTHR10641:SF203SUBFAMILY	NOT	3.7e-102	179-317
Seg	seg	seg	NA	10-20 44-58 64-74 140-153 309-332 348-367

Pseudomolecule

Chromosome	Start	End	Strand
18	7103383	7104952	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00025.1	maker_non_over	exon	1743039	1743510	.	-	.	ID=Zjn_sc00025.1.g02700.1.am.mk:exon:3
Zjn_sc00025.1	maker_non_over	exon	1743601	1744394	.	-	.	ID=Zjn_sc00025.1.g02700.1.am.mk:exon:2
Zjn_sc00025.1	maker_non_over	exon	1744594	1744608	.	-	.	ID=Zjn_sc00025.1.g02700.1.am.mk:exon:1