Z. japonica Nagirizaki
Zjn_sc00025.1.g01560.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G15560.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 932 257 925 0.0 76.9 60 64.8
Subject 717 52 716
Annot | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717
NR gb|ACG27905.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 932 216 929 0.0 77.1 70.7 72.2
Subject 719 1 715
Annot 1-deoxy-D-xylulose-5-phosphate synthase [Zea mays]
IRGSP Os05t0408900-04_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 932 216 928 0.0 77.3 67.9 71.1
Subject 720 1 715
Annot
Sbicolor Sobic.009G135500.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 932 216 929 0.0 77.5 70.3 72
Subject 722 1 718
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00025.1.g01560.1.am.mk length: 932 aa.
IPR005474 Transketolase, N-terminal
method AccNumber shortName E-value location
PatternScan PS00801 TRANSKETOLASE_1 NA 312-331
IPR005475 Transketolase-like, pyrimidine-binding domain
HMMPfam PF02779 Transket_pyr 1.4e-43 605-766
HMMSmart SM00861 Transketolase, 1.6e-69 605-770
IPR005476 Transketolase, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF02780 Transketolase_C 3.5e-27 784-910
IPR005477 Deoxyxylulose-5-phosphate synthase
Molecular Function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity    
Biological Process GO:0016114 terpenoid biosynthetic process    
HAMAP MF_00315 DXP_synth 41.728 286-919
HMMPfam PF13292 DXP_synthase_N 1.3e-106 287-568
HMMTigr TIGR00204 dxs: 5.5e-222 289-918
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF52922 TK 4.2e-31 778-919
IPR015941 Transketolase-like, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.50.920 no description 2.5e-29 783-918
IPR020826 Transketolase binding site
PatternScan PS00802 TRANSKETOLASE_2 NA 711-727
no_ID  
Gene3D G3DSA:3.40.50.970 no description 1.1e-35 525-619
620-769
HMMPanther PTHR11624 DEHYDROGENASE 0 290-932
HMMPanther PTHR11624:SF20 1-DEOXYXYLULOSE-5-PHOSPHATE 0 290-932
Seg seg seg NA 265-279
477-488
superfamily SSF52518 Thiamin 2.9e-64 284-667
601-794
Pseudomolecule
Chromosome Start End Strand
1864812496490261-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00025.1 maker_non_over exon 1120905 1121037 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:14
Zjn_sc00025.1 maker_non_over exon 1121132 1121451 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:13
Zjn_sc00025.1 maker_non_over exon 1121550 1121831 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:12
Zjn_sc00025.1 maker_non_over exon 1121975 1122282 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:11
Zjn_sc00025.1 maker_non_over exon 1122389 1122647 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:10
Zjn_sc00025.1 maker_non_over exon 1123557 1123982 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:9
Zjn_sc00025.1 maker_non_over exon 1124138 1124443 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:8
Zjn_sc00025.1 maker_non_over exon 1124580 1124716 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:7
Zjn_sc00025.1 maker_non_over exon 1124927 1124999 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:6
Zjn_sc00025.1 maker_non_over exon 1125033 1125183 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:5
Zjn_sc00025.1 maker_non_over exon 1127281 1127364 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:4
Zjn_sc00025.1 maker_non_over exon 1127645 1127728 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:3
Zjn_sc00025.1 maker_non_over exon 1127896 1128061 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:2
Zjn_sc00025.1 maker_non_over exon 1129848 1129917 . - . ID=Zjn_sc00025.1.g01560.1.am.mk:exon:1

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