Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00024.1.g00710.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00024.1)

BLAST

TAIR10	AT4G11600.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	192	41	192	4e-57	120.8	55.2	63
		Subject	232	66	231
		Annot	\| Symbols: ATGPX6, PHGPX, LSC803, GPX6 \| glutathione peroxidase 6 \| chr4:7010021-7011330 REVERSE LENGTH=232
NR	ref\|XP_002489307.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	192	5	192	2e-71	106.8	75.5	87.5
		Subject	205	4	204
		Annot	hypothetical protein SORBIDRAFT_0010s007790 [Sorghum bicolor] gi\|241946955\|gb\|EES20100.1\| hypothetical protein SORBIDRAFT_0010s007790 [Sorghum bicolor]
IRGSP	Os04t0556300-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	192	47	192	5e-55	87.5	54.2	61.5
		Subject	168	9	168
		Annot
Sbicolor	Sobic.K022000.1.p\|super_10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	192	5	192	3e-74	106.8	75.5	87.5
		Subject	205	4	204
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000889	Glutathione peroxidase
Zjn_sc00024.1.g00710.1.sm.mkhc				length: 192 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004602	glutathione peroxidase activity
Biological Process	GO:0006979	response to oxidative stress
Biological Process	GO:0055114	oxidation-reduction process
FPrintScan	PR01011	GLUTPROXDASE	1.7e-15	66-83 102-118
HMMPIR	PIRSF000303	Glutathione	7.1e-71	20-192
HMMPanther	PTHR11592	GLUTATHIONE	3e-74	30-191
HMMPfam	PF00255	GSHPx	1.2e-31	48-141
PatternScan	PS00460	GLUTATHIONE_PEROXID_1	NA	68-83
PatternScan	PS00763	GLUTATHIONE_PEROXID_2	NA	105-112
ProfileScan	PS51355	GLUTATHIONE_PEROXID_3	58.745	38-192
IPR012336	Thioredoxin-like fold
Gene3D	G3DSA:3.40.30.10	no description	8e-60	47-190
superfamily	SSF52833	Thioredoxin-like	3e-52	46-190
no_ID
HMMPanther	PTHR11592:SF0	SUBFAMILY	3e-74	30-191
Seg	seg	seg	NA	139-152

Pseudomolecule

Chromosome	Start	End	Strand
17	1201897	1206461	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00024.1	maker	exon	885993	886364	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:6
Zjn_sc00024.1	maker	exon	886467	886634	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:5
Zjn_sc00024.1	maker	exon	888134	888210	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:4
Zjn_sc00024.1	maker	exon	888299	888360	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:3
Zjn_sc00024.1	maker	exon	889476	889552	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:2
Zjn_sc00024.1	maker	exon	890352	890557	.	-	.	ID=Zjn_sc00024.1.g00710.1.sm.mkhc:exon:1