Z. japonica Nagirizaki
Zjn_sc00024.1.g00140.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G31230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 20 229 3e-32 102.5 39.7 51.9
Subject 243 29 239
Annot | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243
NR ref|XP_004979115.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 5 237 3e-39 113.5 52.7 65.4
Subject 269 30 269
Annot PREDICTED: ethylene-responsive transcription factor ERF094-like [Setaria italica]
IRGSP Os09t0572000-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 76 168 6e-33 100.4 32.9 34.6
Subject 238 87 178
Annot
Sbicolor Sobic.002G139400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 68 237 1e-37 113.5 46.4 52.7
Subject 269 106 268
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00024.1.g00140.1.sm.mk length: 237 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4.2e-08 76-87
99-115
Gene3D G3DSA:3.30.730.10 no description 4.5e-27 76-134
HMMPfam PF00847 AP2 8.9e-14 76-125
HMMSmart SM00380 DNA-binding 1.2e-31 75-139
ProfileScan PS51032 AP2_ERF 21.153 75-133
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.8e-22 74-136
no_ID  
HMMPanther PTHR31190 FAMILY 1.4e-20 7-149
HMMPanther PTHR31190:SF0 SUBFAMILY 1.4e-20 7-149
Seg seg seg NA 22-39
159-172
Pseudomolecule
Chromosome Start End Strand
17492059492772-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00024.1 maker_non_over exon 176155 176868 . - . ID=Zjn_sc00024.1.g00140.1.sm.mk:exon:1

Top