Z. japonica Nagirizaki
Zjn_sc00023.1.g06240.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G37020.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 710 121 660 e-124 114.2 39.2 49
Subject 811 261 802
Annot | Symbols: ARF8, ATARF8 | auxin response factor 8 | chr5:14630151-14634106 FORWARD LENGTH=811
NR ref|XP_008662153.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 710 123 656 0.0 113.9 66.2 70.1
Subject 809 265 803
Annot PREDICTED: uncharacterized protein LOC100382863 isoform X1 [Zea mays]
IRGSP Os04t0671900-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 710 123 656 0.0 115.2 64.9 70
Subject 818 272 812
Annot
Sbicolor Sobic.006G262100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 710 123 656 0.0 115.4 66.3 70
Subject 819 272 813
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00023.1.g06240.1.sm.mkhc length: 710 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 4e-19 527-650
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 3e-23 129-195
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 25.260 565-647
no_ID  
HMMPanther PTHR31384 FAMILY 1.2e-84 4-691
Seg seg seg NA 12-25
293-306
323-344
363-373
413-425
448-458
superfamily SSF54277 CAD 6.3e-08 552-645
Pseudomolecule
Chromosome Start End Strand
111049361710500589-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00023.1 maker exon 2651219 2651648 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:12
Zjn_sc00023.1 maker exon 2652258 2652331 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:11
Zjn_sc00023.1 maker exon 2653058 2653248 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:10
Zjn_sc00023.1 maker exon 2653323 2654293 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:9
Zjn_sc00023.1 maker exon 2655053 2655200 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:8
Zjn_sc00023.1 maker exon 2655590 2655665 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:7
Zjn_sc00023.1 maker exon 2655892 2656014 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:6
Zjn_sc00023.1 maker exon 2656178 2656224 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:5
Zjn_sc00023.1 maker exon 2657461 2657517 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:4
Zjn_sc00023.1 maker exon 2657599 2657697 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:3
Zjn_sc00023.1 maker exon 2657879 2657988 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:2
Zjn_sc00023.1 maker exon 2658119 2658191 . - . ID=Zjn_sc00023.1.g06240.1.sm.mkhc:exon:1

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