Z. japonica Nagirizaki
Zjn_sc00023.1.g04740.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G23340.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 234 64 234 6e-39 75.2 37.2 46.6
Subject 176 28 168
Annot | Symbols: DEAR3 | DREB and EAR motif protein 3 | chr2:9938186-9938716 FORWARD LENGTH=176
NR ref|XP_004977035.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 234 1 234 2e-63 104.3 76.1 80.3
Subject 244 1 244
Annot PREDICTED: ethylene-responsive transcription factor RAP2-10-like [Setaria italica]
IRGSP Os04t0648900-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 234 64 234 9e-59 99.6 58.1 62
Subject 233 62 233
Annot
Sbicolor Sobic.006G240500.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 234 1 234 3e-63 109 80.8 85.5
Subject 255 1 255
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00023.1.g04740.1.sm.mk length: 234 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 6e-12 64-75
102-122
Gene3D G3DSA:3.30.730.10 no description 1.9e-29 62-121
HMMPfam PF00847 AP2 3e-14 63-112
HMMSmart SM00380 DNA-binding 7.9e-36 63-126
ProfileScan PS51032 AP2_ERF 22.589 63-120
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.4e-23 62-123
no_ID  
HMMPanther PTHR31729 FAMILY 5.9e-63 42-234
HMMPanther PTHR31729:SF0 SUBFAMILY 5.9e-63 42-234
Seg seg seg NA 13-39
53-65
169-188
196-213
Pseudomolecule
Chromosome Start End Strand
1198529889853692-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00023.1 maker_non_over exon 2010590 2011294 . - . ID=Zjn_sc00023.1.g04740.1.sm.mk:exon:1

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