Z. japonica Nagirizaki
Zjn_sc00023.1.g03640.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18360.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 445 82 438 0.0 82.7 67.4 73.9
Subject 368 3 359
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr4:10146141-10148386 REVERSE LENGTH=368
NR ref|XP_004976858.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 445 79 445 0.0 82.5 77.8 80.7
Subject 367 1 367
Annot PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [Setaria italica] gi|514803961|ref|XP_004976859.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [Setaria italica]
IRGSP Os04t0623500-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 445 79 445 0.0 82.5 76.6 80
Subject 367 1 367
Annot
Sbicolor Sobic.006G220500.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 445 16 445 0.0 93.3 81.3 85.2
Subject 415 17 415
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00023.1.g03640.1.am.mkhc length: 445 aa.
IPR000262 FMN-dependent dehydrogenase
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
HMMPfam PF01070 FMN_dh 2.6e-137 92-433
IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00557 FMN_HYDROXY_ACID_DH_1 NA 331-337
IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent
Molecular Function GO:0010181 FMN binding    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000138 Alpha-hydroxy 4.8e-182 71-444
ProfileScan PS51349 FMN_HYDROXY_ACID_DH_2 115.596 77-438
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 3.5e-155 82-436
no_ID  
HMMPanther PTHR10578 (S)-2-HYDROXY-ACID 4.6e-184 78-445
HMMPanther PTHR10578:SF9 (S)-2-HYDROXY-ACID 4.6e-184 78-445
Seg seg seg NA 32-46
170-194
superfamily SSF51395 FMN-linked 2.8e-119 81-436
Pseudomolecule
Chromosome Start End Strand
1194096159412905+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00023.1 maker exon 1567217 1567356 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:1
Zjn_sc00023.1 maker exon 1567420 1567511 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:2
Zjn_sc00023.1 maker exon 1567802 1567943 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:3
Zjn_sc00023.1 maker exon 1568674 1568798 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:4
Zjn_sc00023.1 maker exon 1568873 1568919 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:5
Zjn_sc00023.1 maker exon 1569023 1569100 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:6
Zjn_sc00023.1 maker exon 1569195 1569319 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:7
Zjn_sc00023.1 maker exon 1569428 1569494 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:8
Zjn_sc00023.1 maker exon 1569576 1569638 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:9
Zjn_sc00023.1 maker exon 1569748 1569817 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:10
Zjn_sc00023.1 maker exon 1569908 1570008 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:11
Zjn_sc00023.1 maker exon 1570119 1570223 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:12
Zjn_sc00023.1 maker exon 1570305 1570507 . + . ID=Zjn_sc00023.1.g03640.1.am.mkhc:exon:13

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