Z. japonica Nagirizaki
Zjn_sc00023.1.g02210.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G13960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 221 362 3e-32 69.9 13 15.7
Subject 397 16 124
Annot | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397
NR ref|XP_004976689.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 190 562 e-114 65.7 43.5 48.1
Subject 373 19 357
Annot PREDICTED: growth-regulating factor 3-like [Setaria italica]
IRGSP Os04t0600900-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 190 562 e-108 67.6 40.8 45.8
Subject 384 19 371
Annot
Sbicolor Sobic.006G203400.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 568 190 562 e-107 66.5 41.5 47
Subject 378 19 362
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00023.1.g02210.1.am.mk length: 568 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 3.9e-21 320-363
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 1.1e-16 221-256
HMMSmart SM00951 no description 1.4e-13 220-256
no_ID  
HMMPanther PTHR31602 FAMILY 6.1e-56 159-562
Seg seg seg NA 19-27
390-415
Pseudomolecule
Chromosome Start End Strand
1187600728762982-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00023.1 maker_non_over exon 917674 918067 . - . ID=Zjn_sc00023.1.g02210.1.am.mk:exon:5
Zjn_sc00023.1 maker_non_over exon 918159 918617 . - . ID=Zjn_sc00023.1.g02210.1.am.mk:exon:4
Zjn_sc00023.1 maker_non_over exon 919011 919262 . - . ID=Zjn_sc00023.1.g02210.1.am.mk:exon:3
Zjn_sc00023.1 maker_non_over exon 919368 919467 . - . ID=Zjn_sc00023.1.g02210.1.am.mk:exon:2
Zjn_sc00023.1 maker_non_over exon 920083 920584 . - . ID=Zjn_sc00023.1.g02210.1.am.mk:exon:1

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