Z. japonica Nagirizaki
Zjn_sc00022.1.g08190.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 673 19 633 e-134 99.6 44.3 56.3
Subject 670 10 665
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR ref|XP_004953169.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 673 8 633 0.0 103.4 62.7 71.3
Subject 696 1 691
Annot PREDICTED: auxin response factor 8-like [Setaria italica]
IRGSP Os02t0628600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 673 8 633 0.0 101.2 62.1 70.6
Subject 681 1 676
Annot
Sbicolor Sobic.004G221400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 673 8 633 0.0 105.2 65.2 72.4
Subject 708 1 703
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g08190.1.am.mk length: 673 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 1.6e-14 131-231
HMMSmart SM01019 B3 6.3e-11 131-232
ProfileScan PS50863 B3 10.856 130-232
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 2.5e-29 253-336
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 13.227 557-631
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 4.9e-26 125-232
superfamily SSF101936 DNA-binding 1.5e-20 125-232
no_ID  
HMMPanther PTHR31384 FAMILY 6.9e-144 1-445
Seg seg seg NA 499-517
542-555
Pseudomolecule
Chromosome Start End Strand
81597339115975920+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 3453901 3454007 . - . ID=Zjn_sc00022.1.g08190.1.am.mk:exon:4
Zjn_sc00022.1 maker_non_over exon 3454306 3454361 . - . ID=Zjn_sc00022.1.g08190.1.am.mk:exon:3
Zjn_sc00022.1 maker_non_over exon 3454467 3455317 . - . ID=Zjn_sc00022.1.g08190.1.am.mk:exon:2
Zjn_sc00022.1 maker_non_over exon 3455423 3456430 . - . ID=Zjn_sc00022.1.g08190.1.am.mk:exon:1

Top