Z. japonica Nagirizaki
Zjn_sc00022.1.g08030.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G24490.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
16 |
123 |
3e-22 |
127.4 |
25.1 |
33.3 |
| Subject |
279 |
13 |
120 |
|
| Annot |
| Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=279 |
| NR |
ref|XP_012703888.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
9 |
122 |
8e-42 |
131.1 |
42.5 |
46.1 |
| Subject |
287 |
15 |
129 |
|
| Annot |
PREDICTED: LOW QUALITY PROTEIN: replication protein A 32 kDa subunit B-like [Setaria italica] |
| IRGSP |
Os02t0633400-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
12 |
123 |
6e-41 |
136.1 |
37.4 |
43.8 |
| Subject |
298 |
21 |
135 |
|
| Annot |
|
| Sbicolor |
Sobic.004G224100.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
219 |
9 |
122 |
8e-48 |
128.8 |
42.9 |
46.1 |
| Subject |
282 |
17 |
128 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00022.1.g08030.1.sm.mkhc |
length: 219 aa. |
| IPR011991 |
Winged helix-turn-helix DNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.10.10.10 |
no description |
4.4e-12 |
126-170 |
| IPR012340 |
Nucleic acid-binding, OB-fold |
| Gene3D |
G3DSA:2.40.50.140 |
no description |
6.5e-22 |
42-123 |
| superfamily |
SSF50249 |
Nucleic |
4.6e-14 |
45-123 |
| IPR014892 |
Replication protein A, C-terminal |
| HMMPfam |
PF08784 |
RPA_C |
1.3e-06 |
124-166 |
| no_ID |
|
| HMMPanther |
PTHR13989 |
REPLICATION |
3.2e-33 |
3-123 |
| HMMPanther |
PTHR13989:SF7 |
SUBFAMILY |
3.2e-33 |
3-123 |
| Seg |
seg |
seg |
NA |
3-21 |
| superfamily |
SSF46785 |
"Winged |
5.7e-09 |
106-174 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 16084862 | 16088560 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00022.1 |
maker |
exon |
3341261 |
3341445 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:1 |
| Zjn_sc00022.1 |
maker |
exon |
3341542 |
3341652 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:2 |
| Zjn_sc00022.1 |
maker |
exon |
3342107 |
3342204 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:3 |
| Zjn_sc00022.1 |
maker |
exon |
3342299 |
3342340 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:4 |
| Zjn_sc00022.1 |
maker |
exon |
3344185 |
3344256 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:5 |
| Zjn_sc00022.1 |
maker |
exon |
3344343 |
3344408 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:6 |
| Zjn_sc00022.1 |
maker |
exon |
3344806 |
3344959 |
. |
+ |
. |
ID=Zjn_sc00022.1.g08030.1.sm.mkhc:exon:7 |