Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00022.1.g06730.1.sm.mkhc ( /TE )

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00022.1)

BLAST

TAIR10	AT2G43090.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	52	242	3e-68	99.2	53	62.1
		Subject	251	60	250
		Annot	\| Symbols: \| Aconitase/3-isopropylmalate dehydratase protein \| chr2:17918957-17919712 FORWARD LENGTH=251
NR	ref\|XP_008643878.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	1	244	e-100	98.4	77.1	83.4
		Subject	249	1	249
		Annot	PREDICTED: 3-isopropylmalate dehydratase small subunit 2 isoform X1 [Zea mays] gi\|413938061\|gb\|AFW72612.1\| 3-isopropylmalate dehydratase small subunit 2 isoform 1 [Zea mays] gi\|413938062\|gb\|AFW72613.1\| 3-isopropylmalate dehydratase small subunit 2 isoform 2 [Zea mays] gi\|413938063\|gb\|AFW72614.1\| 3-isopropylmalate dehydratase small subunit 2 isoform 3 [Zea mays]
IRGSP	Os02t0655300-03_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	12	242	4e-95	101.6	73.9	80.6
		Subject	257	18	256
		Annot
Sbicolor	Sobic.004G296800.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	253	1	244	1e-97	98.8	77.1	83.8
		Subject	250	1	250
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000573	Aconitase A/isopropylmalate dehydratase small subunit, swivel
Zjn_sc00022.1.g06730.1.sm.mkhc				length: 253 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0008152	metabolic process
HMMPfam	PF00694	Aconitase_C	2.6e-18	124-179
IPR004431	3-isopropylmalate dehydratase, small subunit
Molecular Function	GO:0003861	3-isopropylmalate dehydratase activity
Biological Process	GO:0009098	leucine biosynthetic process
Cellular Component	GO:0009316	3-isopropylmalate dehydratase complex
HMMPanther	PTHR11670:SF2	3-ISOPROPYLMALATE	4.2e-79	61-239
IPR015928	Aconitase/3-isopropylmalate dehydratase, swivel
Biological Process	GO:0008152	metabolic process
Gene3D	G3DSA:3.20.19.10	no description	8.5e-29	62-212
superfamily	SSF52016	LeuD/IlvD-like	4e-38	57-239
IPR015937	Aconitase/isopropylmalate dehydratase
Biological Process	GO:0008152	metabolic process
HMMPanther	PTHR11670	ACONITASE	4.2e-79	61-239
no_ID
Seg	seg	seg	NA	2-17 37-60 142-156

Pseudomolecule

Chromosome	Start	End	Strand
8	16594476	16600664	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00022.1	maker	exon	2829157	2829887	.	+	.	ID=Zjn_sc00022.1.g06730.1.sm.mkhc:exon:1
Zjn_sc00022.1	maker	exon	2835077	2835345	.	+	.	ID=Zjn_sc00022.1.g06730.1.sm.mkhc:exon:2