Z. japonica Nagirizaki
Zjn_sc00022.1.g05950.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G02670.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 63 219 1e-72 168.9 50.8 56.7
Subject 402 53 197
Annot | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain 12 | chr4:1176190-1178489 REVERSE LENGTH=402
NR ref|NP_001105281.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 13 219 2e-90 245 69.3 73.1
Subject 583 13 209
Annot INDETERMINATE-related protein 10 [Zea mays] gi|55418540|gb|AAV51390.1| INDETERMINATE-related protein 10 [Zea mays]
IRGSP Os02t0672100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 13 219 3e-82 258.4 63.4 69.3
Subject 615 13 210
Annot
Sbicolor Sobic.004G285400.5.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 13 219 3e-89 250 68.5 73.5
Subject 595 13 207
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g05950.1.sm.mk length: 238 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.0021 104-126
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 106-126
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.032 104-126
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00092 103-126
169-202
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.4e+02 104-126
146-176
181-201
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.3e-111 61-219
HMMPanther PTHR10593:SF17 SUBFAMILY 1.3e-111 61-219
Seg seg seg NA 2-12
44-56
superfamily SSF57667 C2H2 2.8e-08 102-202
Pseudomolecule
Chromosome Start End Strand
81696871116970637+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 2459184 2459247 . - . ID=Zjn_sc00022.1.g05950.1.sm.mk:exon:3
Zjn_sc00022.1 maker_non_over exon 2459561 2459992 . - . ID=Zjn_sc00022.1.g05950.1.sm.mk:exon:2
Zjn_sc00022.1 maker_non_over exon 2460890 2461110 . - . ID=Zjn_sc00022.1.g05950.1.sm.mk:exon:1

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