Z. japonica Nagirizaki
Zjn_sc00022.1.g05620.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G52020.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 264 420 1e-28 55 20.4 24.6
Subject 232 59 232
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232
NR ref|XP_004953436.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 221 422 2e-56 65.6 36.3 37.4
Subject 277 35 277
Annot PREDICTED: ethylene-responsive transcription factor ERF027-like [Setaria italica]
IRGSP Os02t0676800-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 220 422 5e-54 61.8 35.3 37.2
Subject 261 22 261
Annot
Sbicolor Sobic.006G184700.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 422 257 422 4e-45 51.2 27.7 30.1
Subject 216 6 216
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g05620.1.am.mk length: 422 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:3.30.730.10 no description 6.5e-21 270-320
HMMPfam PF00847 AP2 1.3e-13 270-317
HMMSmart SM00380 DNA-binding 3.7e-21 269-330
ProfileScan PS51032 AP2_ERF 18.307 269-331
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.4e-15 268-321
no_ID  
HMMPanther PTHR31985 FAMILY 6.4e-26 246-320
Seg seg seg NA 81-94
205-216
223-236
301-314
329-364
Pseudomolecule
Chromosome Start End Strand
81712588917129609+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 2300212 2300520 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:6
Zjn_sc00022.1 maker_non_over exon 2301196 2301549 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:5
Zjn_sc00022.1 maker_non_over exon 2301892 2301967 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:4
Zjn_sc00022.1 maker_non_over exon 2302039 2302101 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:3
Zjn_sc00022.1 maker_non_over exon 2302220 2302401 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:2
Zjn_sc00022.1 maker_non_over exon 2303648 2303932 . - . ID=Zjn_sc00022.1.g05620.1.am.mk:exon:1

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