Z. japonica Nagirizaki
Zjn_sc00022.1.g05590.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G25470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 220 440 1e-44 49.1 24.1 32
Subject 216 4 216
Annot | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE binding factor 2 | chr4:13015436-13016086 REVERSE LENGTH=216
NR ref|XP_004953437.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 214 440 1e-91 56.4 41.6 43.4
Subject 248 15 248
Annot PREDICTED: dehydration-responsive element-binding protein 1G-like [Setaria italica]
IRGSP Os02t0677300-02_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 218 440 8e-76 50.9 38 40.7
Subject 224 1 224
Annot
Sbicolor Sobic.004G283200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 218 440 1e-75 51.8 39.3 41.6
Subject 228 1 228
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g05590.1.am.mk length: 440 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 8.1e-08 270-281
292-308
Gene3D G3DSA:3.30.730.10 no description 2.5e-28 269-328
HMMPfam PF00847 AP2 1.8e-15 268-318
HMMSmart SM00380 DNA-binding 1.4e-26 269-332
ProfileScan PS51032 AP2_ERF 21.694 269-326
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.8e-23 268-329
no_ID  
HMMPanther PTHR31839 FAMILY 2e-91 216-440
HMMPanther PTHR31839:SF0 SUBFAMILY 2e-91 216-440
Seg seg seg NA 26-43
111-123
305-323
345-353
421-433
Pseudomolecule
Chromosome Start End Strand
81714010717142866+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 2286955 2287668 . - . ID=Zjn_sc00022.1.g05590.1.am.mk:exon:4
Zjn_sc00022.1 maker_non_over exon 2287738 2288049 . - . ID=Zjn_sc00022.1.g05590.1.am.mk:exon:3
Zjn_sc00022.1 maker_non_over exon 2288144 2288315 . - . ID=Zjn_sc00022.1.g05590.1.am.mk:exon:2
Zjn_sc00022.1 maker_non_over exon 2289590 2289714 . - . ID=Zjn_sc00022.1.g05590.1.am.mk:exon:1

Top