Z. japonica Nagirizaki
Zjn_sc00022.1.g05420.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G63970.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 226 58 207 3e-69 102.2 54.4 59.7
Subject 231 63 212
Annot | Symbols: ISPF, MECPS | isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=231
NR ref|XP_002452756.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 226 1 207 6e-93 99.6 78.3 82.3
Subject 225 1 206
Annot hypothetical protein SORBIDRAFT_04g031830 [Sorghum bicolor] gi|241932587|gb|EES05732.1| hypothetical protein SORBIDRAFT_04g031830 [Sorghum bicolor]
IRGSP Os02t0680600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 226 2 207 1e-87 121.7 77.4 81
Subject 275 53 256
Annot
Sbicolor Sobic.004G281900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 226 1 207 5e-96 119.9 78.3 82.3
Subject 271 47 252
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g05420.1.sm.mk length: 226 aa.
IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
method AccNumber shortName E-value location
Molecular Function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    
Biological Process GO:0016114 terpenoid biosynthetic process    
Gene3D G3DSA:3.30.1330.50 no description 8.1e-60 69-208
HAMAP MF_00107 IspF 29.392 70-223
HMMPfam PF02542 YgbB 7e-55 70-207
HMMTigr TIGR00151 ispF: 5.3e-53 71-206
superfamily SSF69765 IpsF-like 1.6e-53 70-207
IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site
Molecular Function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity    
PatternScan PS01350 ISPF NA 104-119
no_ID  
HMMPanther PTHR32125 FAMILY 6.1e-43 69-205
HMMPanther PTHR32125:SF0 SUBFAMILY 6.1e-43 69-205
Pseudomolecule
Chromosome Start End Strand
81718594417190343-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 2239478 2239793 . + . ID=Zjn_sc00022.1.g05420.1.sm.mk:exon:1
Zjn_sc00022.1 maker_non_over exon 2239896 2240026 . + . ID=Zjn_sc00022.1.g05420.1.sm.mk:exon:2
Zjn_sc00022.1 maker_non_over exon 2240909 2241076 . + . ID=Zjn_sc00022.1.g05420.1.sm.mk:exon:3
Zjn_sc00022.1 maker_non_over exon 2242232 2242270 . + . ID=Zjn_sc00022.1.g05420.1.sm.mk:exon:4
Zjn_sc00022.1 maker_non_over exon 2243851 2243877 . + . ID=Zjn_sc00022.1.g05420.1.sm.mk:exon:5

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