Z. japonica Nagirizaki
Zjn_sc00022.1.g05340.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G45650.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
151 |
5 |
151 |
3e-22 |
166.9 |
42.4 |
61.6 |
| Subject |
252 |
49 |
221 |
|
| Annot |
| Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252 |
| NR |
ref|XP_004953459.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
151 |
5 |
151 |
2e-54 |
167.5 |
72.8 |
84.1 |
| Subject |
253 |
49 |
221 |
|
| Annot |
PREDICTED: MADS-box transcription factor 6 [Setaria italica] |
| IRGSP |
Os02t0682200-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
151 |
5 |
151 |
2e-46 |
165.6 |
66.9 |
78.1 |
| Subject |
250 |
49 |
218 |
|
| Annot |
|
| Sbicolor |
Sobic.004G281000.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
151 |
5 |
151 |
1e-55 |
168.9 |
72.8 |
84.1 |
| Subject |
255 |
49 |
222 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00022.1.g05340.1.sm.mk |
length: 151 aa. |
| IPR002487 |
Transcription factor, K-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF01486 |
K-box |
1.2e-20 |
29-94 |
| ProfileScan |
PS51297 |
K_BOX |
11.616 |
39-139 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
73-94 |
| HMMPanther |
PTHR11945 |
MADS |
4.4e-28 |
14-94 |
| HMMPanther |
PTHR11945:SF19 |
MADS |
4.4e-28 |
14-94 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 8 | 17233740 | 17238297 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2191524 |
2191697 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:6 |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2192380 |
2192479 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:5 |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2192598 |
2192659 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:4 |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2194443 |
2194521 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:3 |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2195835 |
2195850 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:2 |
| Zjn_sc00022.1 |
maker_non_over |
exon |
2196057 |
2196081 |
. |
- |
. |
ID=Zjn_sc00022.1.g05340.1.sm.mk:exon:1 |