Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00022.1.g04410.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00022.1)

BLAST

TAIR10	AT1G32060.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	403	1	400	0.0	98	79.4	87.3
		Subject	395	1	393
		Annot	\| Symbols: PRK \| phosphoribulokinase \| chr1:11532668-11534406 FORWARD LENGTH=395
NR	ref\|NP_001047825.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	403	1	403	0.0	100	92.8	95.5
		Subject	403	1	403
		Annot	Os02g0698000 [Oryza sativa Japonica Group] gi\|23198434\|gb\|AAM94337.2\| phosphoribulokinase precursor [Oryza sativa Indica Group] gi\|23305934\|gb\|AAN17353.1\| phosphoribulokinase precursor [Oryza sativa Indica Group] gi\|41052955\|dbj\|BAD07865.1\| phosphoribulokinase precursor [Oryza sativa Japonica Group] gi\|113537356\|dbj\|BAF09739.1\| Os02g0698000 [Oryza sativa Japonica Group] gi\|125540778\|gb\|EAY87173.1\| hypothetical protein OsI_08574 [Oryza sativa Indica Group] gi\|125583350\|gb\|EAZ24281.1\| hypothetical protein OsJ_08032 [Oryza sativa Japonica Group] gi\|215740841\|dbj\|BAG96997.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|530684244\|gb\|AGT38449.1\| phosphoribulokinase [Oryza sativa Japonica Group]
IRGSP	Os02t0698000-03_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	403	1	403	0.0	100	92.8	95.5
		Subject	403	1	403
		Annot
Sbicolor	Sobic.004G272100.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	403	1	403	0.0	103.5	91.6	95
		Subject	417	1	417
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR006082	Phosphoribulokinase
Zjn_sc00022.1.g04410.1.sm.mkhc				length: 403 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0008974	phosphoribulokinase activity
FPrintScan	PR00478	PHRIBLKINASE	6.6e-35	64-81 173-191 208-225 226-249
PatternScan	PS00567	PHOSPHORIBULOKINASE	NA	208-221
IPR006083	Phosphoribulokinase/uridine kinase
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0016301	kinase activity
HMMPfam	PF00485	PRK	1.9e-80	59-257
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	6.8e-39	55-330
no_ID
Gene3D	G3DSA:3.40.50.300	no description	4.5e-98	55-330
HMMPanther	PTHR10285	URIDINE	2.9e-253	7-393
HMMPanther	PTHR10285:SF29	PHOSPHORIBULOKINASE	2.9e-253	7-393
Seg	seg	seg	NA	34-46 82-93

Pseudomolecule

Chromosome	Start	End	Strand
8	17612724	17615825	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00022.1	maker	exon	1813996	1815289	.	-	.	ID=Zjn_sc00022.1.g04410.1.sm.mkhc:exon:5
Zjn_sc00022.1	maker	exon	1815521	1815765	.	-	.	ID=Zjn_sc00022.1.g04410.1.sm.mkhc:exon:4
Zjn_sc00022.1	maker	exon	1815910	1815994	.	-	.	ID=Zjn_sc00022.1.g04410.1.sm.mkhc:exon:3
Zjn_sc00022.1	maker	exon	1816102	1816186	.	-	.	ID=Zjn_sc00022.1.g04410.1.sm.mkhc:exon:2
Zjn_sc00022.1	maker	exon	1816464	1817097	.	-	.	ID=Zjn_sc00022.1.g04410.1.sm.mkhc:exon:1