Z. japonica Nagirizaki
Zjn_sc00022.1.g04320.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G06170.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 261 54 261 4e-42 160.9 34.1 52.5
Subject 420 207 409
Annot | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1885146-1886564 REVERSE LENGTH=420
NR ref|XP_002452697.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 261 1 261 e-110 181.2 78.5 89.7
Subject 473 211 473
Annot hypothetical protein SORBIDRAFT_04g030850 [Sorghum bicolor] gi|241932528|gb|EES05673.1| hypothetical protein SORBIDRAFT_04g030850 [Sorghum bicolor]
IRGSP Os04t0599300-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 261 1 261 2e-91 177.8 65.5 82.4
Subject 464 205 464
Annot
Sbicolor Sobic.004G270900.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 261 1 261 e-113 181.2 78.5 89.7
Subject 473 211 473
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g04320.1.sm.mkhc length: 261 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 5.5e-09 67-123
HMMPfam PF00010 HLH 1.9e-08 63-109
HMMSmart SM00353 helix 2.8e-06 66-115
ProfileScan PS50888 BHLH 13.440 60-109
superfamily SSF47459 HLH, 3.2e-11 58-142
no_ID  
Coil coil coiled-coil NA 106-127
HMMPanther PTHR11514 MYC 4e-23 46-261
HMMPanther PTHR11514:SF8 EGL3 4e-23 46-261
Seg seg seg NA 48-67
134-145
Pseudomolecule
Chromosome Start End Strand
81764035017644240-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker exon 1785581 1785586 . + . ID=Zjn_sc00022.1.g04320.1.sm.mkhc:exon:1
Zjn_sc00022.1 maker exon 1787807 1788076 . + . ID=Zjn_sc00022.1.g04320.1.sm.mkhc:exon:2
Zjn_sc00022.1 maker exon 1788552 1788965 . + . ID=Zjn_sc00022.1.g04320.1.sm.mkhc:exon:3
Zjn_sc00022.1 maker exon 1789069 1789471 . + . ID=Zjn_sc00022.1.g04320.1.sm.mkhc:exon:4

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