Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00022.1.g04170.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00022.1)

BLAST

TAIR10	AT1G64970.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	298	55	294	3e-91	116.8	55.4	66.4
		Subject	348	60	347
		Annot	\| Symbols: G-TMT, TMT1, VTE4 \| gamma-tocopherol methyltransferase \| chr1:24134337-24135993 REVERSE LENGTH=348
NR	gb\|AGF92707.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	298	21	297	e-131	118.1	82.6	85.2
		Subject	352	23	352
		Annot	gamma-tocopherol methyltransferase [Zea mays subsp. mays] gi\|452076307\|gb\|AGF92719.1\| gamma-tocopherol methyltransferase [Zea mays subsp. mays] gi\|452076317\|gb\|AGF92724.1\| gamma-tocopherol methyltransferase [Zea mays subsp. mays] gi\|452076335\|gb\|AGF92733.1\| gamma-tocopherol methyltransferase [Zea mays subsp. mays] gi\|452076339\|gb\|AGF92735.1\| gamma-tocopherol methyltransferase [Zea mays subsp. mays]
IRGSP	Os02t0701600-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	298	53	294	e-124	121.5	73.5	77.5
		Subject	362	72	358
		Annot
Sbicolor	Sobic.004G269800.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	298	43	297	e-130	119.5	78.5	81.5
		Subject	356	51	356
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003333	Mycolic acid cyclopropane synthase
Zjn_sc00022.1.g04170.1.sm.mkhc				length: 298 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0008610	lipid biosynthetic process
HMMPfam	PF02353	CMAS	4.6e-06	119-157
no_ID
Gene3D	G3DSA:3.40.50.150	no description	1e-23	53-158 159-294
HMMPanther	PTHR10108	METHYLTRANSFERASE	1.5e-84	59-285
HMMPanther	PTHR10108:SF18	TOCOPHEROL	1.5e-84	59-285
Seg	seg	seg	NA	20-39 105-121
superfamily	SSF53335	S-adenosyl-L-methionine-dependent	6e-36	60-298

Pseudomolecule

Chromosome	Start	End	Strand
8	17704317	17707560	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00022.1	maker	exon	1722261	1723273	.	-	.	ID=Zjn_sc00022.1.g04170.1.sm.mkhc:exon:5
Zjn_sc00022.1	maker	exon	1723371	1723473	.	-	.	ID=Zjn_sc00022.1.g04170.1.sm.mkhc:exon:4
Zjn_sc00022.1	maker	exon	1723591	1723794	.	-	.	ID=Zjn_sc00022.1.g04170.1.sm.mkhc:exon:3
Zjn_sc00022.1	maker	exon	1724312	1724448	.	-	.	ID=Zjn_sc00022.1.g04170.1.sm.mkhc:exon:2
Zjn_sc00022.1	maker	exon	1725165	1725504	.	-	.	ID=Zjn_sc00022.1.g04170.1.sm.mkhc:exon:1