Z. japonica Nagirizaki
Zjn_sc00022.1.g03770.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G27740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 28 431 e-173 98.2 64.2 78.5
Subject 430 13 413
Annot | Symbols: CARA | carbamoyl phosphate synthetase A | chr3:10281470-10283792 REVERSE LENGTH=430
NR ref|XP_004953629.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 14 432 0.0 101.8 86.3 90
Subject 446 14 432
Annot PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic [Setaria italica]
IRGSP Os02t0708100-02_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 37 431 0.0 108 81.5 85.8
Subject 473 36 458
Annot
Sbicolor Sobic.004G265900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 438 12 432 0.0 101.8 85.4 90.4
Subject 446 12 432
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g03770.1.sm.mkhc length: 438 aa.
IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.50.30.20 no description 9e-56 76-219
HMMPfam PF00988 CPSase_sm_chain 2e-50 76-204
HMMSmart SM01097 Carbamoyl-phosphate 1.9e-76 75-205
superfamily SSF52021 Carbamoyl 1.9e-53 74-224
IPR006274 Carbamoyl-phosphate synthase, small subunit
Biological Process GO:0006543 glutamine catabolic process    
Biological Process GO:0070409 carbamoyl phosphate biosynthetic process    
HAMAP MF_01209 CPSase_S_chain 42.254 75-436
HMMTigr TIGR01368 CPSaseIIsmall: 3.7e-144 77-431
IPR017926 Glutamine amidotransferase
HMMPfam PF00117 GATase 2.8e-42 265-430
ProfileScan PS51273 GATASE_TYPE_1 27.139 261-438
no_ID  
FPrintScan PR00096 GATASE 8.9e-12 304-313
331-342
416-429
FPrintScan PR00097 ANTSNTHASEII 6.5e-07 304-313
331-342
416-429
FPrintScan PR00099 CPSGATASE 2.4e-35 262-276
301-315
331-347
348-365
373-384
Gene3D G3DSA:3.40.50.880 no description 1.5e-71 226-431
HMMPanther PTHR11405 CARBAMOYLTRANSFERASE 7.4e-217 76-431
Seg seg seg NA 52-68
superfamily SSF52317 Class 3e-56 224-433
Pseudomolecule
Chromosome Start End Strand
81786407417868390+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker exon 1561431 1561450 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:11
Zjn_sc00022.1 maker exon 1562282 1562447 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:10
Zjn_sc00022.1 maker exon 1562906 1563253 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:9
Zjn_sc00022.1 maker exon 1563328 1563434 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:8
Zjn_sc00022.1 maker exon 1564184 1564312 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:7
Zjn_sc00022.1 maker exon 1564428 1564495 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:6
Zjn_sc00022.1 maker exon 1564573 1564633 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:5
Zjn_sc00022.1 maker exon 1564714 1564802 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:4
Zjn_sc00022.1 maker exon 1565146 1565272 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:3
Zjn_sc00022.1 maker exon 1565392 1565434 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:2
Zjn_sc00022.1 maker exon 1565589 1565747 . - . ID=Zjn_sc00022.1.g03770.1.sm.mkhc:exon:1

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