Z. japonica Nagirizaki
Zjn_sc00022.1.g02350.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 86 7e-33 269.7 69.7 86.5
Subject 240 1 86
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR ref|XP_012703481.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 88 2e-38 271.9 86.5 95.5
Subject 242 1 88
Annot PREDICTED: MADS-box transcription factor 57-like [Setaria italica] gi|835914464|ref|XP_012703484.1| PREDICTED: MADS-box transcription factor 57-like [Setaria italica]
IRGSP Os02t0731200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 88 2e-38 270.8 84.3 91
Subject 241 1 87
Annot
Sbicolor Sobic.004G250000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 88 7e-44 206.7 91 96.6
Subject 184 1 88
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g02350.1.sm.mkhc length: 89 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.1e-29 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.5e-27 10-59
HMMSmart SM00432 no description 5.2e-40 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 31.987 1-61
superfamily SSF55455 SRF-like 1.6e-30 1-84
no_ID  
HMMPanther PTHR11945 MADS 3.4e-50 1-82
HMMPanther PTHR11945:SF19 MADS 3.4e-50 1-82
Pseudomolecule
Chromosome Start End Strand
81840318618405264+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker exon 1024557 1025483 . - . ID=Zjn_sc00022.1.g02350.1.sm.mkhc:exon:2
Zjn_sc00022.1 maker exon 1026454 1026635 . - . ID=Zjn_sc00022.1.g02350.1.sm.mkhc:exon:1

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