Z. japonica Nagirizaki
Zjn_sc00022.1.g02250.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G12350.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 88 4e-42 301.1 74.7 84.2
Subject 286 1 88
Annot | Symbols: MYB42, AtMYB42 | myb domain protein 42 | chr4:7324912-7326636 FORWARD LENGTH=286
NR ref|NP_001149774.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 88 9e-44 287.4 88.4 91.6
Subject 273 1 88
Annot odorant 1 protein [Zea mays] gi|195633787|gb|ACG36738.1| odorant 1 protein [Zea mays]
IRGSP Os06t0258000-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 88 8e-45 281.1 85.3 89.5
Subject 267 1 88
Annot
Sbicolor Sobic.004G248700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 95 1 88 7e-47 297.9 90.5 91.6
Subject 283 1 88
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g02250.1.sm.mk length: 95 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 1.3e-14 14-61
HMMSmart SM00717 SANT 2.5e-12 13-63
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 8.2e-06 5-62
63-88
superfamily SSF46689 Homeodomain-like 1.5e-16 13-79
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 20.991 9-65
no_ID  
HMMPanther PTHR10641 MYB-LIKE 5.5e-57 1-88
HMMPanther PTHR10641:SF30 MYB 5.5e-57 1-88
Pseudomolecule
Chromosome Start End Strand
81844164218442013-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker_non_over exon 987808 987940 . + . ID=Zjn_sc00022.1.g02250.1.sm.mk:exon:1
Zjn_sc00022.1 maker_non_over exon 988025 988179 . + . ID=Zjn_sc00022.1.g02250.1.sm.mk:exon:2

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