Z. japonica Nagirizaki
Zjn_sc00022.1.g01530.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G73590.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 667 1 550 0.0 93.3 59.7 67.2
Subject 622 1 579
Annot | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622
NR ref|XP_004953880.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 667 1 550 0.0 89.1 79 79.9
Subject 594 1 551
Annot PREDICTED: auxin efflux carrier component 1 [Setaria italica]
IRGSP Os02t0743400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 667 1 550 0.0 89.2 75.6 77.5
Subject 595 1 552
Annot
Sbicolor Sobic.004G240900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 667 1 550 0.0 90.7 75.3 76.9
Subject 605 1 562
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00022.1.g01530.1.sm.mkhc length: 667 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 4.6e-184 9-662
IPR014024 Auxin efflux carrier, plant type
HMMTigr TIGR00946 2a69: 6.1e-144 1-550
no_ID  
HMMPanther PTHR31752 FAMILY 0 2-667
HMMPanther PTHR31752:SF0 SUBFAMILY 0 2-667
Seg seg seg NA 314-331
403-415
Pseudomolecule
Chromosome Start End Strand
81881770718820544-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00022.1 maker exon 609277 610411 . + . ID=Zjn_sc00022.1.g01530.1.sm.mkhc:exon:1
Zjn_sc00022.1 maker exon 610514 610772 . + . ID=Zjn_sc00022.1.g01530.1.sm.mkhc:exon:2
Zjn_sc00022.1 maker exon 610865 610950 . + . ID=Zjn_sc00022.1.g01530.1.sm.mkhc:exon:3
Zjn_sc00022.1 maker exon 611051 611507 . + . ID=Zjn_sc00022.1.g01530.1.sm.mkhc:exon:4
Zjn_sc00022.1 maker exon 611656 612114 . + . ID=Zjn_sc00022.1.g01530.1.sm.mkhc:exon:5

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