Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00022.1.g01170.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00022.1)

BLAST

TAIR10	AT2G21940.5		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	234	73	221	2e-43	129.5	35	47.9
		Subject	303	153	302
		Annot	\| Symbols: SK1, ATSK1 \| shikimate kinase 1 \| chr2:9351106-9352881 FORWARD LENGTH=303
NR	sp\|Q5NTH4.1\|SK1_ORYSJ		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	234	71	234	9e-76	131.6	59.4	63.2
		Subject	308	145	308
		Annot	RecName: Full=Shikimate kinase 1, chloroplastic; Short=OsSK1; Flags: Precursor gi\|56805577\|dbj\|BAD83412.1\| shikimate kinase 1 [Oryza sativa Japonica Group]
IRGSP	Os06t0225800-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	234	80	234	1e-68	112.8	54.3	58.5
		Subject	264	109	264
		Annot
Sbicolor	Sobic.004G236300.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	234	71	234	2e-78	141	59.8	64.5
		Subject	330	167	330
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000623	Shikimate kinase/Threonine synthase-like 1
Zjn_sc00022.1.g01170.1.sm.mkhc				length: 234 aa.
method	AccNumber	shortName	E-value	location
FPrintScan	PR01100	SHIKIMTKNASE	1.7e-05	96-105 116-133
HMMPfam	PF01202	SKI	2e-19	73-184
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.8e-18	74-193
HMMPanther	PTHR21087	SHIKIMATE	1e-19	71-229
Seg	seg	seg	NA	75-86

Pseudomolecule

Chromosome	Start	End	Strand
8	18975037	18977968	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00022.1	maker	exon	451853	452705	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:7
Zjn_sc00022.1	maker	exon	452821	452885	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:6
Zjn_sc00022.1	maker	exon	453003	453081	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:5
Zjn_sc00022.1	maker	exon	453226	453355	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:4
Zjn_sc00022.1	maker	exon	453447	453529	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:3
Zjn_sc00022.1	maker	exon	454042	454079	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:2
Zjn_sc00022.1	maker	exon	454577	454784	.	-	.	ID=Zjn_sc00022.1.g01170.1.sm.mkhc:exon:1