Z. japonica Nagirizaki
Zjn_sc00021.1.g00510.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G16440.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 515 1 274 7e-51 164.5 25.6 33.4
Subject 847 1 267
Annot | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:7126536-7130665 REVERSE LENGTH=847
NR dbj|BAJ89113.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 515 1 257 e-121 164.3 43.5 45.6
Subject 846 1 253
Annot predicted protein [Hordeum vulgare subsp. vulgare]
IRGSP Os01t0544450-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 515 17 274 e-112 167.4 43.5 45.8
Subject 862 23 285
Annot
Sbicolor Sobic.003G183700.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 515 1 274 e-107 165.4 44.9 47.8
Subject 852 1 275
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00021.1.g00510.1.sm.mk length: 515 aa.
IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00493 MCM 1.5e-12 359-391
HMMSmart SM00350 minichromosome 5e-11 184-437
ProfileScan PS50051 MCM_2 18.408 359-405
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 0.00013 242-283
superfamily SSF50249 Nucleic 1.5e-21 138-286
IPR018525 Mini-chromosome maintenance, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 371-379
IPR027925 MCM N-terminal domain
HMMPfam PF14551 MCM_N 2e-16 139-257
no_ID  
Gene3D G3DSA:3.30.1640.10 no description 4.9e-07 132-235
Gene3D G3DSA:3.40.50.300 no description 6.5e-07 358-395
HMMPanther PTHR11630 DNA 1.8e-52 7-391
HMMPanther PTHR11630:SF45 DNA 1.8e-52 7-391
Seg seg seg NA 3-23
29-58
87-104
Pseudomolecule
Chromosome Start End Strand
676270757631667+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00021.1 maker_non_over exon 493040 493073 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:1
Zjn_sc00021.1 maker_non_over exon 493173 493883 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:2
Zjn_sc00021.1 maker_non_over exon 493964 493990 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:3
Zjn_sc00021.1 maker_non_over exon 494872 494936 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:4
Zjn_sc00021.1 maker_non_over exon 495262 495384 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:5
Zjn_sc00021.1 maker_non_over exon 495482 495595 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:6
Zjn_sc00021.1 maker_non_over exon 495976 496074 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:7
Zjn_sc00021.1 maker_non_over exon 496695 496778 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:8
Zjn_sc00021.1 maker_non_over exon 497020 497098 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:9
Zjn_sc00021.1 maker_non_over exon 497191 497327 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:10
Zjn_sc00021.1 maker_non_over exon 497558 497632 . + . ID=Zjn_sc00021.1.g00510.1.sm.mk:exon:11

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