Z. japonica Nagirizaki
Zjn_sc00021.1.g00420.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G27450.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 1 346 e-114 107.4 59.4 77
Subject 378 1 346
Annot | Symbols: MK | mevalonate kinase | chr5:9691051-9692975 FORWARD LENGTH=378
NR ref|XP_004958043.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 1 346 e-160 109.9 82.4 88.4
Subject 387 1 351
Annot PREDICTED: mevalonate kinase-like [Setaria italica]
IRGSP Os10t0329300-03_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 1 348 e-156 113.9 81.3 86.9
Subject 401 1 357
Annot
Sbicolor Sobic.004G012400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 352 2 346 e-157 114.5 81.5 85.5
Subject 403 15 367
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00021.1.g00420.1.am.mkhc length: 352 aa.
IPR006203 GHMP kinase, ATP-binding, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
PatternScan PS00627 GHMP_KINASES_ATP NA 135-146
IPR006204 GHMP kinase N-terminal domain
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00288 GHMP_kinases_N 5.7e-20 128-211
IPR006205 Mevalonate kinase
Molecular Function GO:0004496 mevalonate kinase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPanther PTHR10457:SF4 MEVALONATE 1.9e-98 8-347
HMMTigr TIGR00549 mevalon_kin: 3e-75 8-343
IPR006206 Mevalonate/galactokinase
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016301 kinase activity    
Molecular Function GO:0016773 phosphotransferase activity, alcohol group as acceptor    
FPrintScan PR00959 MEVGALKINASE 1.4e-28 7-31
133-155
192-211
328-345
IPR013750 GHMP kinase, C-terminal domain
HMMPfam PF08544 GHMP_kinases_C 1.6e-06 292-345
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 8.8e-66 2-236
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 1.2e-33 1-224
no_ID  
Gene3D G3DSA:3.30.70.890 no description 3.9e-37 237-346
HMMPanther PTHR10457 MEVALONATE 1.9e-98 8-347
Seg seg seg NA 152-170
superfamily SSF55060 GHMP 4.5e-28 224-346
Pseudomolecule
Chromosome Start End Strand
675570347558996-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00021.1 maker exon 422999 423828 . - . ID=Zjn_sc00021.1.g00420.1.am.mkhc:exon:4
Zjn_sc00021.1 maker exon 424155 424414 . - . ID=Zjn_sc00021.1.g00420.1.am.mkhc:exon:3
Zjn_sc00021.1 maker exon 424492 424729 . - . ID=Zjn_sc00021.1.g00420.1.am.mkhc:exon:2
Zjn_sc00021.1 maker exon 424832 424961 . - . ID=Zjn_sc00021.1.g00420.1.am.mkhc:exon:1

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