Z. japonica Nagirizaki
Zjn_sc00020.1.g04190.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G14390.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
287 |
188 |
285 |
1e-46 |
168.6 |
28.2 |
31 |
| Subject |
484 |
387 |
484 |
|
| Annot |
| Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484 |
| NR |
ref|XP_002442818.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
287 |
1 |
188 |
3e-66 |
170.4 |
54.4 |
58.2 |
| Subject |
489 |
1 |
224 |
|
| Annot |
hypothetical protein SORBIDRAFT_08g003330 [Sorghum bicolor] gi|241943511|gb|EES16656.1| hypothetical protein SORBIDRAFT_08g003330 [Sorghum bicolor] |
| IRGSP |
Os02t0440000-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
287 |
1 |
188 |
6e-65 |
170.7 |
49.5 |
57.1 |
| Subject |
490 |
1 |
226 |
|
| Annot |
|
| Sbicolor |
Sobic.008G038600.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
287 |
1 |
188 |
3e-69 |
170.4 |
54.4 |
58.2 |
| Subject |
489 |
1 |
224 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00020.1.g04190.1.sm.mkhc |
length: 287 aa. |
| IPR009006 |
Alanine racemase/group IV decarboxylase, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:2.40.37.10 |
no description |
3e-24 |
188-280 |
| superfamily |
SSF50621 |
Alanine |
2.4e-24 |
196-286 |
| IPR022643 |
Orn/DAP/Arg decarboxylase 2, C-terminal |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| HMMPfam |
PF00278 |
Orn_DAP_Arg_deC |
3.9e-14 |
197-260 |
| IPR022644 |
Orn/DAP/Arg decarboxylase 2, N-terminal |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| HMMPfam |
PF02784 |
Orn_Arg_deC_N |
9.3e-08 |
120-166 |
| IPR022653 |
Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| PatternScan |
PS00878 |
ODR_DC_2_1 |
NA |
125-143 |
| no_ID |
|
| Gene3D |
G3DSA:3.20.20.10 |
no description |
3.6e-14 |
104-166 |
| HMMPanther |
PTHR11482 |
ARGININE/DIAMINOPIMELATE/ORNITHINE |
1.5e-46 |
188-286 |
| HMMPanther |
PTHR11482:SF5 |
DIAMINOPIMELATE |
1.5e-46 |
188-286 |
| Seg |
seg |
seg |
NA |
45-66 |
| superfamily |
SSF51419 |
PLP-binding |
2.6e-19 |
94-194 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 12076672 | 12083882 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00020.1 |
maker |
exon |
1981665 |
1984760 |
. |
- |
. |
ID=Zjn_sc00020.1.g04190.1.sm.mkhc:exon:5 |
| Zjn_sc00020.1 |
maker |
exon |
1984987 |
1985076 |
. |
- |
. |
ID=Zjn_sc00020.1.g04190.1.sm.mkhc:exon:4 |
| Zjn_sc00020.1 |
maker |
exon |
1985153 |
1985275 |
. |
- |
. |
ID=Zjn_sc00020.1.g04190.1.sm.mkhc:exon:3 |
| Zjn_sc00020.1 |
maker |
exon |
1987659 |
1987725 |
. |
- |
. |
ID=Zjn_sc00020.1.g04190.1.sm.mkhc:exon:2 |
| Zjn_sc00020.1 |
maker |
exon |
1988379 |
1988875 |
. |
- |
. |
ID=Zjn_sc00020.1.g04190.1.sm.mkhc:exon:1 |