Z. japonica Nagirizaki
Zjn_sc00020.1.g03650.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G16710.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
173 |
3 |
173 |
6e-61 |
101.7 |
65.3 |
77.5 |
| Subject |
176 |
4 |
176 |
|
| Annot |
| Symbols: | glycosyltransferase family protein 28 | chr4:9398818-9399618 FORWARD LENGTH=176 |
| NR |
ref|XP_004952465.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
173 |
1 |
173 |
7e-84 |
99.4 |
90.2 |
93.6 |
| Subject |
172 |
1 |
172 |
|
| Annot |
PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Setaria italica] |
| IRGSP |
Os02t0467700-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
173 |
54 |
173 |
3e-52 |
70.5 |
57.2 |
61.8 |
| Subject |
122 |
4 |
122 |
|
| Annot |
|
| Sbicolor |
Sobic.008G110500.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
173 |
1 |
173 |
5e-86 |
99.4 |
88.4 |
93.6 |
| Subject |
172 |
1 |
172 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00020.1.g03650.1.sm.mkhc |
length: 173 aa. |
| IPR007235 |
Glycosyl transferase, family 28, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| Molecular Function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
|
|
| Molecular Function |
GO:0030246 |
carbohydrate binding |
|
|
| Biological Process |
GO:0030259 |
lipid glycosylation |
|
|
| HMMPfam |
PF04101 |
Glyco_tran_28_C |
4.4e-32 |
8-156 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2000 |
no description |
1.1e-53 |
7-169 |
| HMMPanther |
PTHR12867 |
GLYCOSYL |
1.6e-74 |
1-173 |
| superfamily |
SSF53756 |
UDP-Glycosyltransferase/glycogen |
5.6e-08 |
42-171 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 12387714 | 12390654 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00020.1 |
maker |
exon |
1674893 |
1675506 |
. |
- |
. |
ID=Zjn_sc00020.1.g03650.1.sm.mkhc:exon:5 |
| Zjn_sc00020.1 |
maker |
exon |
1676081 |
1676339 |
. |
- |
. |
ID=Zjn_sc00020.1.g03650.1.sm.mkhc:exon:4 |
| Zjn_sc00020.1 |
maker |
exon |
1676987 |
1677086 |
. |
- |
. |
ID=Zjn_sc00020.1.g03650.1.sm.mkhc:exon:3 |
| Zjn_sc00020.1 |
maker |
exon |
1677256 |
1677474 |
. |
- |
. |
ID=Zjn_sc00020.1.g03650.1.sm.mkhc:exon:2 |
| Zjn_sc00020.1 |
maker |
exon |
1677591 |
1677833 |
. |
- |
. |
ID=Zjn_sc00020.1.g03650.1.sm.mkhc:exon:1 |