Z. japonica Nagirizaki
Zjn_sc00020.1.g02380.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 154 9 140 4e-70 335.1 70.8 80.5
Subject 516 64 195
Annot | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain 4 | chr2:518328-521170 REVERSE LENGTH=516
NR gb|AGT17004.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 154 1 140 5e-77 238.3 87 89
Subject 367 13 152
Annot zinc finger protein [Saccharum hybrid cultivar R570]
IRGSP Os02t0518500-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 154 9 140 2e-78 319.5 83.8 85.7
Subject 492 47 178
Annot
Sbicolor Sobic.004G162700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 154 7 140 6e-77 308.4 83.1 85.1
Subject 475 45 178
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00020.1.g02380.1.sm.mk length: 154 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 30-50
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.741 28-50
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00026 27-50
92-125
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.3e+02 28-50
69-99
104-124
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 5.4e-94 8-140
HMMPanther PTHR10593:SF17 SUBFAMILY 5.4e-94 8-140
superfamily SSF57667 C2H2 4.4e-08 26-125
Pseudomolecule
Chromosome Start End Strand
71303655513037390+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00020.1 maker_non_over exon 1028157 1028199 . - . ID=Zjn_sc00020.1.g02380.1.sm.mk:exon:2
Zjn_sc00020.1 maker_non_over exon 1028571 1028992 . - . ID=Zjn_sc00020.1.g02380.1.sm.mk:exon:1

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