Z. japonica Nagirizaki
Zjn_sc00020.1.g01820.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT3G52720.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
153 |
53 |
143 |
6e-18 |
185.6 |
28.1 |
41.2 |
| Subject |
284 |
166 |
265 |
|
| Annot |
| Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhydrase 1 | chr3:19538804-19541116 REVERSE LENGTH=284 |
| NR |
ref|XP_004954966.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
153 |
53 |
151 |
3e-41 |
179.7 |
55.6 |
60.1 |
| Subject |
275 |
166 |
273 |
|
| Annot |
PREDICTED: alpha carbonic anhydrase 1, chloroplastic-like [Setaria italica] |
| IRGSP |
Os02t0533300-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
153 |
52 |
142 |
2e-37 |
173.9 |
49 |
52.9 |
| Subject |
266 |
164 |
263 |
|
| Annot |
|
| Sbicolor |
Sobic.004G166000.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
153 |
53 |
151 |
3e-44 |
161.4 |
55.6 |
60.8 |
| Subject |
247 |
138 |
245 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00020.1.g01820.1.sm.mk |
length: 153 aa. |
| IPR001148 |
Alpha carbonic anhydrase |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.10.200.10 |
no description |
6.7e-13 |
7-141 |
| HMMPfam |
PF00194 |
Carb_anhydrase |
4.6e-06 |
86-141 |
| HMMSmart |
SM01057 |
Eukaryotic-type |
0.00048 |
5-144 |
| ProfileScan |
PS51144 |
ALPHA_CA_2 |
9.494 |
1-144 |
| superfamily |
SSF51069 |
Carbonic |
2.1e-13 |
70-143 |
| IPR023561 |
Carbonic anhydrase, alpha-class |
| HMMPanther |
PTHR18952 |
CARBONIC |
2.9e-20 |
52-153 |
| no_ID |
|
| HMMPanther |
PTHR18952:SF2 |
CARBONIC |
2.9e-20 |
52-153 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 13252929 | 13256139 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00020.1 |
maker_non_over |
exon |
809408 |
809554 |
. |
- |
. |
ID=Zjn_sc00020.1.g01820.1.sm.mk:exon:5 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
809676 |
809831 |
. |
- |
. |
ID=Zjn_sc00020.1.g01820.1.sm.mk:exon:4 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
810200 |
810232 |
. |
- |
. |
ID=Zjn_sc00020.1.g01820.1.sm.mk:exon:3 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
810796 |
810887 |
. |
- |
. |
ID=Zjn_sc00020.1.g01820.1.sm.mk:exon:2 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
812585 |
812618 |
. |
- |
. |
ID=Zjn_sc00020.1.g01820.1.sm.mk:exon:1 |