Z. japonica Nagirizaki
Zjn_sc00020.1.g01420.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G43710.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
32 |
367 |
e-176 |
131.3 |
77.7 |
85.3 |
| Subject |
482 |
147 |
482 |
|
| Annot |
| Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482 |
| NR |
ref|XP_002452231.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
31 |
367 |
0.0 |
134.6 |
88.3 |
91.3 |
| Subject |
494 |
158 |
494 |
|
| Annot |
hypothetical protein SORBIDRAFT_04g022140 [Sorghum bicolor] gi|241932062|gb|EES05207.1| hypothetical protein SORBIDRAFT_04g022140 [Sorghum bicolor] |
| IRGSP |
Os02t0541325-00_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
31 |
367 |
0.0 |
107.9 |
85.3 |
88.8 |
| Subject |
396 |
59 |
395 |
|
| Annot |
|
| Sbicolor |
Sobic.004G170200.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
367 |
31 |
367 |
0.0 |
134.6 |
88.3 |
91.3 |
| Subject |
494 |
158 |
494 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00020.1.g01420.1.am.mkhc |
length: 367 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
5.4e-25 |
31-289 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
3.8e-39 |
28-241 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
5.7e-69 |
31-345 |
| IPR021115 |
Pyridoxal-phosphate binding site |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| PatternScan |
PS00392 |
DDC_GAD_HDC_YDC |
NA |
191-212 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
1.5e-238 |
31-367 |
| HMMPanther |
PTHR11999:SF4 |
GROUP |
1.5e-238 |
31-367 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 13432252 | 13434339 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00020.1 |
maker |
exon |
631208 |
632071 |
. |
- |
. |
ID=Zjn_sc00020.1.g01420.1.am.mkhc:exon:5 |
| Zjn_sc00020.1 |
maker |
exon |
632190 |
632323 |
. |
- |
. |
ID=Zjn_sc00020.1.g01420.1.am.mkhc:exon:4 |
| Zjn_sc00020.1 |
maker |
exon |
632396 |
632589 |
. |
- |
. |
ID=Zjn_sc00020.1.g01420.1.am.mkhc:exon:3 |
| Zjn_sc00020.1 |
maker |
exon |
632694 |
632813 |
. |
- |
. |
ID=Zjn_sc00020.1.g01420.1.am.mkhc:exon:2 |
| Zjn_sc00020.1 |
maker |
exon |
633207 |
633295 |
. |
- |
. |
ID=Zjn_sc00020.1.g01420.1.am.mkhc:exon:1 |