Z. japonica Nagirizaki
Zjn_sc00020.1.g01250.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G09710.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 15 309 3e-40 66.8 11.6 17.3
Subject 610 11 283
Annot | Symbols: | Homeodomain-like superfamily protein | chr1:3141119-3144232 FORWARD LENGTH=610
NR ref|XP_004952835.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 16 887 0.0 99.7 53.5 63.2
Subject 910 16 880
Annot PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like [Setaria italica]
IRGSP Os02t0551400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 15 782 e-154 78.8 39.5 50.1
Subject 719 30 715
Annot
Sbicolor Sobic.002G320500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 3 878 0.0 89.8 50.5 60.7
Subject 820 2 819
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00020.1.g01250.1.sm.mkhc length: 913 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 6e-06 225-268
HMMSmart SM00717 SANT 1.3e-06 222-274
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 4.9e-09 217-270
superfamily SSF46689 Homeodomain-like 4.3e-08 216-283
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 10.311 218-277
no_ID  
HMMPanther PTHR21717 TELOMERIC 2.9e-29 44-550
HMMPanther PTHR21717:SF9 TELOMERIC 2.9e-29 44-550
Seg seg seg NA 1-15
218-224
343-356
364-388
403-412
418-434
455-465
815-824
Pseudomolecule
Chromosome Start End Strand
71351670813521755+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00020.1 maker exon 543792 545960 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:6
Zjn_sc00020.1 maker exon 546132 546291 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:5
Zjn_sc00020.1 maker exon 546603 546971 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:4
Zjn_sc00020.1 maker exon 548252 548338 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:3
Zjn_sc00020.1 maker exon 548473 548690 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:2
Zjn_sc00020.1 maker exon 548716 548839 . - . ID=Zjn_sc00020.1.g01250.1.sm.mkhc:exon:1

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