Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00020.1.g00780.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00020.1)

BLAST

TAIR10	AT4G25800.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	475	45	475	e-143	126.5	55.6	69.3
		Subject	601	109	596
		Annot	\| Symbols: \| Calmodulin-binding protein \| chr4:13125224-13127765 FORWARD LENGTH=601
NR	ref\|XP_002316655.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	475	47	475	e-162	134.1	60.8	74.5
		Subject	637	139	636
		Annot	calmodulin-binding protein 60-C [Populus trichocarpa] gi\|222859720\|gb\|EEE97267.1\| calmodulin-binding protein 60-C [Populus trichocarpa]
IRGSP	Os02t0562300-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	475	52	354	e-149	137.3	57.1	59.6
		Subject	652	143	447
		Annot
Sbicolor	Sobic.004G181600.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	475	48	352	e-155	136.8	58.1	61.3
		Subject	650	136	442
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR012416	Calmodulin binding protein-like
Zjn_sc00020.1.g00780.1.sm.mkhc				length: 475 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF07887	Calmodulin_bind	2.5e-117	50-308
no_ID
HMMPanther	PTHR31713	FAMILY	4.2e-145	47-475
HMMPanther	PTHR31713:SF0	SUBFAMILY	4.2e-145	47-475
Seg	seg	seg	NA	21-27 71-82 316-329 416-431

Pseudomolecule

Chromosome	Start	End	Strand
7	13725918	13730146	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00020.1	maker	exon	335401	335768	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:7
Zjn_sc00020.1	maker	exon	336732	336945	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:6
Zjn_sc00020.1	maker	exon	337413	337616	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:5
Zjn_sc00020.1	maker	exon	337695	337855	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:4
Zjn_sc00020.1	maker	exon	337964	338290	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:3
Zjn_sc00020.1	maker	exon	338639	338673	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:2
Zjn_sc00020.1	maker	exon	339511	339629	.	-	.	ID=Zjn_sc00020.1.g00780.1.sm.mkhc:exon:1