Z. japonica Nagirizaki
Zjn_sc00020.1.g00450.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT4G02780.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
213 |
4e-66 |
225.9 |
31 |
43.9 |
| Subject |
802 |
383 |
595 |
|
| Annot |
| Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802 |
| NR |
ref|XP_004956310.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
347 |
e-127 |
221.4 |
64.2 |
77.2 |
| Subject |
786 |
368 |
714 |
|
| Annot |
PREDICTED: ent-copalyl diphosphate synthase 2-like isoform X1 [Setaria italica] |
| IRGSP |
Os04t0178300-02_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
348 |
8e-99 |
204.2 |
53.8 |
66.8 |
| Subject |
725 |
329 |
654 |
|
| Annot |
|
| Sbicolor |
Sobic.005G161200.1.p|Chr05|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
355 |
1 |
347 |
e-115 |
221.7 |
60.3 |
74.9 |
| Subject |
787 |
368 |
712 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00020.1.g00450.1.sm.mk |
length: 355 aa. |
| IPR001906 |
Terpene synthase, N-terminal domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| Molecular Function |
GO:0010333 |
terpene synthase activity |
|
|
| Molecular Function |
GO:0016829 |
lyase activity |
|
|
| Gene3D |
G3DSA:1.50.30.10 |
no description |
3e-35 |
1-147 |
| HMMPfam |
PF01397 |
Terpene_synth |
5.2e-20 |
1-96 |
| IPR005630 |
Terpene synthase, metal-binding domain |
| Molecular Function |
GO:0000287 |
magnesium ion binding |
|
|
| Molecular Function |
GO:0010333 |
terpene synthase activity |
|
|
| Molecular Function |
GO:0016829 |
lyase activity |
|
|
| HMMPfam |
PF03936 |
Terpene_synth_C |
1e-18 |
140-291 |
| IPR008930 |
Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid |
| superfamily |
SSF48239 |
Terpenoid |
3.7e-33 |
1-121 |
| IPR008949 |
Terpenoid synthase |
| Gene3D |
G3DSA:1.10.600.10 |
no description |
0.00044 |
156-286 |
| superfamily |
SSF48576 |
Terpenoid |
1.4e-07 |
135-285 |
| no_ID |
|
| HMMPanther |
PTHR31739 |
FAMILY |
8.5e-108 |
1-336 |
| HMMPanther |
PTHR31739:SF0 |
SUBFAMILY |
8.5e-108 |
1-336 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 13870853 | 13873350 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00020.1 |
maker_non_over |
exon |
192197 |
192226 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:7 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
193112 |
193318 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:6 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
193466 |
193565 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:5 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
193655 |
193897 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:4 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
194035 |
194133 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:3 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
194207 |
194322 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:2 |
| Zjn_sc00020.1 |
maker_non_over |
exon |
194422 |
194694 |
. |
- |
. |
ID=Zjn_sc00020.1.g00450.1.sm.mk:exon:1 |