Z. japonica Nagirizaki
Zjn_sc00019.1.g04240.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G19640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 3 169 9e-47 118.3 67.5 74.6
Subject 200 2 200
Annot | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family protein | chr4:10687441-10689449 REVERSE LENGTH=200
NR ref|NP_001050846.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 4e-60 120.1 78.1 84.6
Subject 203 1 203
Annot Os03g0666500 [Oryza sativa Japonica Group] gi|40538929|gb|AAR87186.1| putative small GTP-binding protein [Oryza sativa Japonica Group] gi|108710277|gb|ABF98072.1| Ras-related protein RHN1, putative, expressed [Oryza sativa Japonica Group] gi|113549317|dbj|BAF12760.1| Os03g0666500 [Oryza sativa Japonica Group] gi|215692370|dbj|BAG87790.1| unnamed protein product [Oryza sativa Japonica Group] gi|215695240|dbj|BAG90431.1| unnamed protein product [Oryza sativa Japonica Group]
IRGSP Os03t0666500-03_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 5e-63 120.1 78.1 84.6
Subject 203 1 203
Annot
Sbicolor Sobic.001G143300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 169 1 169 3e-61 120.1 78.7 83.4
Subject 203 1 203
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g04240.1.sm.mkhc length: 169 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2e-18 12-33
35-51
53-75
HMMPfam PF00071 Ras 3e-06 13-75
85-121
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 0.00043 14-125
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.5e-13 12-126
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 5.6e-12 11-73
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 5.3e-08 9-126
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3e-28 7-123
no_ID  
Gene3D G3DSA:3.40.50.300 no description 7.8e-06 4-77
88-134
HMMPanther PTHR24073 FAMILY 5.8e-48 7-168
HMMPanther PTHR24073:SF132SUBFAMILY NOT 5.8e-48 7-168
ProfileScan PS51419 RAB 12.197 6-169
Pseudomolecule
Chromosome Start End Strand
249218734928547+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker exon 3445776 3445936 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:8
Zjn_sc00019.1 maker exon 3446035 3446070 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:7
Zjn_sc00019.1 maker exon 3446540 3447749 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:6
Zjn_sc00019.1 maker exon 3447899 3448037 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:5
Zjn_sc00019.1 maker exon 3449957 3450005 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:4
Zjn_sc00019.1 maker exon 3451438 3451532 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:3
Zjn_sc00019.1 maker exon 3451612 3451689 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:2
Zjn_sc00019.1 maker exon 3452256 3452450 . - . ID=Zjn_sc00019.1.g04240.1.sm.mkhc:exon:1

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