Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00019.1.g04210.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00019.1)

BLAST

TAIR10	AT2G04032.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	14	376	e-104	97.1	49.5	66.2
		Subject	365	15	365
		Annot	\| Symbols: ZIP7 \| zinc transporter 7 precursor \| chr2:1289944-1291251 FORWARD LENGTH=365
NR	ref\|XP_002464109.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	4	376	e-161	99.5	78.7	86.4
		Subject	374	2	374
		Annot	hypothetical protein SORBIDRAFT_01g012440 [Sorghum bicolor] gi\|241917963\|gb\|EER91107.1\| hypothetical protein SORBIDRAFT_01g012440 [Sorghum bicolor]
IRGSP	Os03t0667300-00_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	35	376	e-147	98.4	70.7	77.1
		Subject	370	36	370
		Annot
Sbicolor	Sobic.001G142900.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	376	4	376	e-164	99.5	78.7	86.4
		Subject	374	2	374
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003689	Zinc/iron permease
Zjn_sc00019.1.g04210.1.sm.mk				length: 376 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016020	membrane
Biological Process	GO:0030001	metal ion transport
Molecular Function	GO:0046873	metal ion transmembrane transporter activity
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF02535	Zip	2.8e-60	52-373
IPR004698	Zinc/iron permease, fungal/plant
Molecular Function	GO:0005385	zinc ion transmembrane transporter activity
Cellular Component	GO:0016021	integral to membrane
Biological Process	GO:0071577	zinc ion transmembrane transport
HMMTigr	TIGR00820	zip:	7.8e-128	44-376
no_ID
HMMPanther	PTHR11040	ZINC/IRON	5.3e-144	50-376
HMMPanther	PTHR11040:SF1	ZINC/IRON	5.3e-144	50-376
Seg	seg	seg	NA	13-25 179-194 352-367

Pseudomolecule

Chromosome	Start	End	Strand
2	4942975	4944105	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00019.1	maker_non_over	exon	3430218	3431348	.	+	.	ID=Zjn_sc00019.1.g04210.1.sm.mk:exon:1