Z. japonica Nagirizaki
Zjn_sc00019.1.g04160.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G34460.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 312 5 302 e-128 120.8 71.5 79.5
Subject 377 34 329
Annot | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377
NR gb|EMT27863.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 312 2 302 e-159 116.7 85.9 90.1
Subject 364 32 332
Annot hypothetical protein F775_27280 [Aegilops tauschii]
IRGSP Os03t0669200-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 312 1 302 e-156 121.8 87.5 90.4
Subject 380 31 332
Annot
Sbicolor Sobic.001G142100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 312 2 302 e-161 121.8 86.9 89.7
Subject 380 32 332
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g04160.1.sm.mkhc length: 312 aa.
IPR001632 G-protein, beta subunit
method AccNumber shortName E-value location
FPrintScan PR00319 GPROTEINB 2.1e-23 32-48
51-65
70-85
88-105
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.073 28-64
121-156
172-204
212-247
271-296
HMMSmart SM00320 WD40 0.053 25-64
67-106
116-156
159-204
208-247
250-296
ProfileScan PS50082 WD_REPEATS_2 10.976 32-73
123-165
171-213
215-256
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.1e-57 25-297
IPR016346 Guanine nucleotide-binding protein, beta subunit
HMMPIR PIRSF002394 Guanine 1.8e-122 2-304
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 38.362 32-305
superfamily SSF50978 WD40 1.5e-56 22-297
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 143-157
283-297
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.8e-06 51-65
143-157
191-205
no_ID  
HMMPanther PTHR19850 GUANINE 4.4e-173 1-302
HMMPanther PTHR19850:SF3 GUANINE 4.4e-173 1-302
Seg seg seg NA 178-193
Pseudomolecule
Chromosome Start End Strand
249599914963825+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker exon 3410498 3410841 . - . ID=Zjn_sc00019.1.g04160.1.sm.mkhc:exon:5
Zjn_sc00019.1 maker exon 3411348 3411711 . - . ID=Zjn_sc00019.1.g04160.1.sm.mkhc:exon:4
Zjn_sc00019.1 maker exon 3412111 3412535 . - . ID=Zjn_sc00019.1.g04160.1.sm.mkhc:exon:3
Zjn_sc00019.1 maker exon 3414035 3414129 . - . ID=Zjn_sc00019.1.g04160.1.sm.mkhc:exon:2
Zjn_sc00019.1 maker exon 3414270 3414332 . - . ID=Zjn_sc00019.1.g04160.1.sm.mkhc:exon:1

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