Z. japonica Nagirizaki
Zjn_sc00019.1.g03260.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G14440.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 864 359 864 e-161 69.3 37.7 44.3
Subject 599 37 598
Annot | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epoxycarotenoid dioxygenase 3 | chr3:4831678-4833477 REVERSE LENGTH=599
NR gb|AHA94921.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 864 336 864 0.0 70.7 53.8 55.6
Subject 611 1 611
Annot viviparous 14 [Sorghum bicolor] gi|559100103|gb|AHA94922.1| viviparous 14 [Sorghum bicolor]
IRGSP Os03t0645900-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 864 336 864 0.0 70.4 50.7 53.7
Subject 608 1 608
Annot
Sbicolor Sobic.001G155300.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 864 336 864 0.0 70.7 53.7 55.4
Subject 611 1 611
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g03260.1.am.mk length: 864 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 2.8e-191 401-864
HMMPfam PF03055 RPE65 7.7e-15 464-717
789-856
no_ID  
HMMPanther PTHR10543:SF1 9-CIS-EPOXYCAROTENOID 2.8e-191 401-864
Seg seg seg NA 106-139
278-293
367-401
418-437
Pseudomolecule
Chromosome Start End Strand
254300985434639-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker_non_over exon 2939684 2939820 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:1
Zjn_sc00019.1 maker_non_over exon 2940179 2940607 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:2
Zjn_sc00019.1 maker_non_over exon 2940752 2940923 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:3
Zjn_sc00019.1 maker_non_over exon 2942029 2942216 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:4
Zjn_sc00019.1 maker_non_over exon 2942320 2943256 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:5
Zjn_sc00019.1 maker_non_over exon 2943284 2943484 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:6
Zjn_sc00019.1 maker_non_over exon 2943518 2943613 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:7
Zjn_sc00019.1 maker_non_over exon 2943668 2943757 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:8
Zjn_sc00019.1 maker_non_over exon 2943797 2943853 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:9
Zjn_sc00019.1 maker_non_over exon 2943881 2943940 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:10
Zjn_sc00019.1 maker_non_over exon 2943971 2944114 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:11
Zjn_sc00019.1 maker_non_over exon 2944142 2944225 . + . ID=Zjn_sc00019.1.g03260.1.am.mk:exon:12

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