Z. japonica Nagirizaki
Zjn_sc00019.1.g02800.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G59060.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 184 1 142 4e-20 240.2 35.3 46.7
Subject 442 276 412
Annot | Symbols: PIL6, PIF5 | phytochrome interacting factor 3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
NR ref|XP_004982350.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 184 1 175 3e-69 287 80.4 85.3
Subject 528 342 524
Annot PREDICTED: transcription factor PIF1-like isoform X1 [Setaria italica]
IRGSP Os12t0610200-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 184 1 140 7e-31 241.8 44 51.6
Subject 445 289 424
Annot
Sbicolor Sobic.001G158900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 184 1 171 1e-55 290.8 74.5 79.3
Subject 535 348 535
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g02800.1.sm.mkhc length: 184 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 4e-10 1-38
HMMPfam PF00010 HLH 2.1e-05 3-31
ProfileScan PS50888 BHLH 12.074 1-30
superfamily SSF47459 HLH, 6.1e-10 1-63
no_ID  
HMMPanther PTHR12565 STEROL 1.5e-25 1-122
HMMPanther PTHR12565:SF7 BASIC 1.5e-25 1-122
Seg seg seg NA 58-80
Pseudomolecule
Chromosome Start End Strand
257675645770515-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker exon 2603808 2603912 . + . ID=Zjn_sc00019.1.g02800.1.sm.mkhc:exon:1
Zjn_sc00019.1 maker exon 2604015 2604272 . + . ID=Zjn_sc00019.1.g02800.1.sm.mkhc:exon:2
Zjn_sc00019.1 maker exon 2604352 2604534 . + . ID=Zjn_sc00019.1.g02800.1.sm.mkhc:exon:3
Zjn_sc00019.1 maker exon 2605662 2606759 . + . ID=Zjn_sc00019.1.g02800.1.sm.mkhc:exon:4

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