Z. japonica Nagirizaki
Zjn_sc00019.1.g02530.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G04730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 240 4 240 1e-44 98.3 45.8 53.3
Subject 236 2 204
Annot | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236
NR ref|XP_004982377.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 240 1 240 4e-59 110.8 65 71.7
Subject 266 1 234
Annot PREDICTED: auxin-responsive protein IAA30-like isoform X2 [Setaria italica]
IRGSP Os12t0601300-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 240 2 240 7e-55 115.4 60.8 67.5
Subject 277 3 245
Annot
Sbicolor Sobic.008G156900.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 240 27 240 1e-53 117.1 57.1 62.1
Subject 281 34 249
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g02530.1.sm.mkhc length: 240 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 2.3e-56 4-240
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 24.836 154-240
no_ID  
HMMPanther PTHR31734 FAMILY 1.2e-69 1-240
Seg seg seg NA 55-73
superfamily SSF54277 CAD 1.6e-14 141-240
Pseudomolecule
Chromosome Start End Strand
259599415961188+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker exon 2413135 2413277 . - . ID=Zjn_sc00019.1.g02530.1.sm.mkhc:exon:3
Zjn_sc00019.1 maker exon 2413537 2413781 . - . ID=Zjn_sc00019.1.g02530.1.sm.mkhc:exon:2
Zjn_sc00019.1 maker exon 2414048 2414382 . - . ID=Zjn_sc00019.1.g02530.1.sm.mkhc:exon:1

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