Z. japonica Nagirizaki
Zjn_sc00019.1.g02320.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18590.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 175 88 172 3e-19 60.6 24 34.3
Subject 106 1 85
Annot | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:10236524-10236940 FORWARD LENGTH=106
NR ref|XP_012698170.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 175 88 172 2e-27 60 34.9 41.1
Subject 105 1 85
Annot PREDICTED: replication protein A 14 kDa subunit-like [Setaria italica]
IRGSP Os01t0253600-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 175 88 172 5e-29 60.6 33.1 39.4
Subject 106 1 85
Annot
Sbicolor Sobic.003G115400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 175 88 172 6e-27 60.6 30.9 39.4
Subject 106 1 85
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00019.1.g02320.1.am.mk length: 175 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 3.8e-10 97-171
superfamily SSF50249 Nucleic 2e-11 90-171
IPR013970 Replication factor A protein 3
HMMPfam PF08661 Rep_fac-A_3 9.7e-16 92-172
no_ID  
Seg seg seg NA 73-94
Pseudomolecule
Chromosome Start End Strand
261056806107985-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00019.1 maker_non_over exon 2266338 2266378 . + . ID=Zjn_sc00019.1.g02320.1.am.mk:exon:1
Zjn_sc00019.1 maker_non_over exon 2267383 2267554 . + . ID=Zjn_sc00019.1.g02320.1.am.mk:exon:2
Zjn_sc00019.1 maker_non_over exon 2267659 2267704 . + . ID=Zjn_sc00019.1.g02320.1.am.mk:exon:3
Zjn_sc00019.1 maker_non_over exon 2268375 2268643 . + . ID=Zjn_sc00019.1.g02320.1.am.mk:exon:4

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